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原著論文(英文)

(*は責任著者。下線は太田。二重下線は太田が責任著者。#はequal contributionあるいはjoint 1st author。被引用件数はGoogle Scholarで2ケタ以上を示しているもののみ記載)

55) Kae Koganebuchi, Kimitoshi Sato, Kiyotaka Fujii, Toshihiro Kumabe, Kuniaki Haneji, Takashi Toma, Hajime Ishida, Keiichiro Joh, Hidenobu Soejima, Shuhei Mano, Motoyuki Ogawa, Hiroki Oota*
An analysis of the demographic history of the risk allele R4810K in RNF213 of moyamoya disease
Annals of Human Genetics (2021) doi:10.1111/ahg.12424

54) R. Schmidt*, K. Wakabayashi, D. Waku, T. Gakuhari, K. Koganebuchi, M. Ogawa, J. Karsten, M. Sokhatsky, H. Oota*
Analysis of ancient human mitochondrial DNA from Verteba Cave, Ukraine: insights Into the origins and expansions of the Late Neolithic-Chalcolithic Cututeni-Tripolye Culture.
Anthropological Sciences (2020) doi: 10.1537/ase.200205

53) S. Mawaribuchi, K. Nakasako, K. Tamura, M. Matsuda, T. Katsumura, H. Oota, G. Watanabe, S. Yoneda, N. Takamatsu, M. Ito
Parallel evolution of the two dmrt1-derived genes dmy and dm-W for verterbrate sex determination
iSCIENCE (2020)23(1):100757. doi: 10.1016/j.isci.2019.100757. 

52) T. Katsumura*, S. Oda, H. Mitani, H. Oota*
Medaka population genome structure and demographic history described via genotyping-by-sequencing.
G3 (2019) 9(1):217-228. doi: 10.1534/g3.118.200779.

51) K. Koganebuchi, T. Gakuhari, H. Takeshima, K. Sato, K. Fujii, T. Kumabe, S. Kasagi, T. Sato, A. Tajima, H. Shibata, M. Ogawa, H. Oota*
A new targeted capture method using bacterial artificial chromosome (BAC) libraries as baits for sequencing relatively large genes.
PLOS ONE (2018) 13(7):e0200170. doi: 10.1371/journal.pone.0200170.
IF=2.766

50) H. McColl#, F. Racimo#, L. Vinner#, F. Demeter#, T. Gakuhari, J.V.M. Mayar, G. van Driem, U.G. Wilken, A. Seguin-Orlando, C. de la F. Castro, S. Wasef, R. Shoocongdej, V. Souksavatdy, T. Sayavongkhamdy, M.M. Saidin, M.E. Allentoft, T. Sato, T. Korneliussen, A. Prohaska, A. Margaryan, P. de B. Damgaard, S. Kaewsutthi, P. Lertrit, T.M.H. Nguyen, H.C. Hung, T.M.Tran, H.N. Truong, G.H. guyen, S. Shahidan, K. Wiradnyana, H. Matsumae, N. Shigehara, M. Yoneda, H. Ishida, T. Masuyama, Y. Yamada, A. Tajima, H. Shibata, A. Toyoda, T. Hanihara, S. Nakagome, T. Deviese, A-M.Bacon, P. Duringer, J-L. Ponche, L. Shackelford, E. P-Edoumba, A.T. Nguyen, B. B-Pryce, J-C.Galipaud, R. Kinaston,H. Buckley, C. Pottier, S. Rasmussen, T. Higham, R.A. Foley, M.M. Lahr, L. Orlando, M. Sikora, H. Oota, C. Higham, D. M. Lambert, E. Willerslev
The prehistoric peopling of Southeast Asia.
Science (2018) 361(6397):88-92. doi: 10.1126/science.aat3628.
IF=41.058(被引用件数:3)

49) Y. Tonoyama, M. Shinya, A. Toyoda, T. Kitano, A. Oga, T. Nishimaki, T. Katsumura, H. Oota, MT. Wan, B.W.P.Yip, M. O.L. Helen, S. Chisada, T. Deguchi, D. W.T. Au, K.Naruse, Y. Kamei, Y. Taniguchi*
Abnormal nuclear morphology is independent of longevity in a zmpste24-deficient fish model of Hutchinson-Gilford progeria syndrome (HGPS)
Comparative Biochemistry and Physiology – Part C: Toxicology & Pharmacology (2018) 209:54-62. doi: 10.1016/j.cbpc.2018.03.006. [Epub ahead of print]
IF=2.426

48) T. Nishimura#, T. Katsumura#, M. Motoi, H. Oota*, S. Watanuki*
Experimental evidence reveals the UCP1 genotype changes the oxygen consumption attributed to non-shivering thermogenesis in humans.
Scientific Reports (2017) 7:5570. doi: 10.1038/s41598-017-05766-3
IF=4.122

47) T. Akiyama, T. Katsumura, S. Nakagome, S-i. Lee, K. Joh, H. Soejima, K. Fujimoto, R. Kimura, H. Ishida, T. Hanihara, A. Yasukouchi, Y. Satta, S. Higuchi*, H. Oota*
An ancestral haplotype of the human PERIOD2 gene associates with reduced sensitivity to light-induced melatonin suppression.
PLOS ONE (2017) 12(6): e0178373. Doi.org/10.1371/journal.pone.0178373
IF=2.766

46) S. Nakagome*, H. Chinen, A. Iraha, A. Hokama, Y. Takeyama, S. Sakisaka, T. Matsui, J. R. Kidd, K. K. Kidd, H. S. Said, W. Suda, H. Morita, M. Hattori, T. Hanihara, R. Kimura, H. Ishida, J. Fujita, F. Kinjo, S. Mano, H. Oota
Confounding effects of microbiome on the susceptibility of TNFSF15 to Crohn’s disease in the Ryukyu Islands.
Human Genetics (2017) 136(4):387-397. Doi: 10.1007/s00439-017-1764-0.
IF=3.930(被引用件数:5)

45) K. Igarashi, J. Kobayashi, T. Katsumura, Y. Urushihara, K. Hida, T. Watanabe-Asaka, H. Oota, S. Oda, H. Mitani
An approach to elucidate NBS1 function in DNA repair using frequent nonsynonymous polymorphism in wild medaka (Oryzias Latipes) populations.
PLOS ONE (2017) 12(1):e0170006. Doi: 10.1371/journal.pone.0170006
IF=2.766

44) K. Koganebuchi, K. Haneji, T. Toma, K. Joh, H. Soejima, K. Fujimoto, H. Ishida, M. Ogawa, T. Hanihara, S. Harada, S. Kawamura, H. Oota*. 
The allele frequency of ALDH2*Glu504Lys and ADH1B*Arg47His for the Ryukyu islanders and their history of expansion among East Asians. 
American Journal of Human Biology (2017) 29(2).  Doi:10.1002/ajhb.22933
Epub 2016 Nov 1.
IF=1.780(被引用件数:3)

43) T. Katsumura, Y. Fukuyo, S. Kawamura, H. Oota*. 
A comparative study on the regulatory region of the PERIOD1 gene among diurnal/Nocturnal primates.
Journal of Physiological Anthropology (2016) 35(1):21. Doi: 10.1186/s40101-016-0111-9
IF=1.250

42) K. Nagata#, C. Hashimoto#, T. Watanabe-Asaka*, K. Itoh, T. Yasuda, K. Ohta, H. Oonishi, K. Igarashi, M. Suzuki, T. Funayama, Y. Kobayashi, T. Nishimaki, T. Katsumura, H. Oota, M. Ogawa, A. Oga, K. Ikemoto, H. Itoh, N. Kutsuna, S. Oda,  H. Mitani
In vivo 3D analysis of systemic effects after local heavy-ion beam irradiation in an animal model.
Scientific Reports (2016) 6:28691. Doi:10.1038/srep28691.
IF=4.259(被引用件数:5)

41) R. Komine, T. Nishimaki, T. Kimura, H. Oota, K. Naruse, N. Homma, S. Fukamachi*
Transgenic medaka that overexpress growth hormone have a skin color that does not indicate the activation or inhabition of somatolactin-α signal
GENE (2016) 584:38-46. dx.doi.org/10.1016/j.gene.2016.02.046
IF=2.415

40) S. Mawaribuchi, M. Ito*, M. Ogata, H. Oota, T. Katsumura, N. Yakamatsu, I. Miura*
Meiotic recombination counteracts male-biased mutation (male-driven evolution).
Proceedings of the Royal Society B (2015) 283(1823): 20152628: dx.doi.org/10.1098/rspb.20152691
IF=4.823(被引用件数:3)

39) A. Kikuta, E. Furukawa, R. Ogawa, N. Suganuma, M. Saitoh, T. Nishimaki, T. Katsumura, H. Oota, T. Kawamoto, H. Tatsukawa, H. Hashimoto, K. Hitomi
Biochemical characterization of medaka (Oryzias latipes) transgulutaminases, OITGK1 and OITGK2, as orthologues of human keratinocyte-type. transgulutaminases 
PLOS ONE 2015 10(12): e0144194; doi: 10.137/journal.pone.0144194.eCollection 2015
IF=3.057

38) PE. Savage, H. Matsumae, H. Oota, M. Stoneking, T. Currie, A. Tajima, M. Gillan and S. Brown
How ‘Circumpolar’ is Ainu music? Musical and Genetic Perspectives on the History of the Japanese Archipelago.
Ethnomusicology Forum (2015) 24:3,443-467   doi:10.1080/17411912.2015.1084236
(被引用件数:9)

37) S. Nakagome, T. Sato, H. Ishida, T. Hanihara, T. Yamaguchi, R. Kimura, S. Mano*, H. Oota* and The Asian DNA Repository Consortium
Model-based verification of hypotheses on the origin of modern Japanese revisited by Bayesian inference based on genome-wide SNP data.
Molecular Biology and Evolution (2015) 32(6):1533-1543, Mar10; doi:10.1093/molbev/msv045
IF=13.649(被引用件数:12)

36) T. Katsumura, S. Oda, S. Nakagome, T. Hanihara, H. Kataoka, H. Mitani, S. Kawamura, H. Oota*
Natural allelic variations of xenobiotic metabolizing enzymes affect sexual dimorphism in Oryzias latipes.
Proceedings of the Royal Society B: Biological Sciences (2014) 281(1797), Dec 22; pii: 20142259. doi: 10.1098/rspb.2014.2259.
IF=5.501(被引用件数:4)

35) T. Sato, S. Nakagome, C. Watanabe, K. Yamaguchi, A. Kawaguchi, K. Koganebuchi, K. Haneji, T. Yamaguchi, T. Hanihara, K. Yamamoto, H. Ishida, S. Mano, R. Kimura*, H. Oota*
Genome-Wide SNP Analysis Reveals Population Structure and Demographic History of the Ryukyu Islanders in the Southern Part of the Japanese Archipelago.
Molecular Biology and Evolution (2014) 31(11): 2929-40. doi: 10.1093 Pii: msu230. [Epub ahead of print]
IF=9.105(被引用件数:21)

34) Y. Takezawa*, K. Kato, H. Oota, T. Caulfield, A. Fujimoto, S. Honda, N. Kamatani, S. Kawamura, K. Kawashima, R. Kimura, H. Matsumae, A. Saito, EP. Savage, N. Seguchi, K. Shimizu, S. Terao, Y. Yamaguchi-Kabata, A. Yasukouchi, M. Yoneda, K. Tokunaga
Human genetic research, race, ethnicity and the labeling of populations: recommendations based on an interdisciplinary workshop in Japan.
BMC Medical Ethics (2014) 15:33. Doi: 10.1186/1472-6939-15-33.
IF=1.495(被引用件数:11)

33) H. S. Said, W. Suda, S. Nakagome, H. Chinen, K. Oshima, S. Kim, R. Kimura, A. Iraha, H. Ishida, J. Fujita, S. Mano, H. Morita, T. Dohi, H. Oota, M. Hattori*
Dysbiosis of salivary microbiota in inflammatory bowel disease and its association with oral immunological biomarkers.
DNA Research (2014) 21(1):15-25. doi: 10.1093/dnares/dst037. 
IF=5.477(被引用件数:113)

32) Y. Matsushita, H. Oota, B.J. Welker, M.S. Pavelka, S. Kawamura*
Color Vision Variation as Evidenced by Hybrid L/M Opsin Genes in Wild Populations of Trichromatic Alouatta New World Monkeys.
International Journal of Primatology (2014) 35:71-87. doi: 10.1007/s10764-013-9705-9
IF=1.993(被引用件数:13)

31) N. Suzuki*, D. Nawa, H. Tateno, T. Yasuda, S. Oda, H. Mitani, T. Nishimaki, T. Katsumura, H. Oota, T. Hanihara, A. Oga, J. Hirabayashi, K. Yamamoto
Generation of Monoclonal antibodies against the Galß1-4Gal epitope: a key tool in studies of species-specific glycans expressed in fish, amphibians, and birds.
Glycobiology (2013) 23(1):91-105 Doi: 10.1093/glycob/cws129. 
IF=3.747(被引用件数:4)

30) T. Jinam, N. Nishida, M. Hirai, S. Kawamura, H. Oota, K. Umetsu, R. Kimura, J. Ohashi, A. Tajima, T. Yamamoto, H. Tanabe, S. Mano, Y. Suto, T. Kaname, K. Naritomi, K. Yanagi, N. Niikawa, K. Omoto*, K. Tokunaga, N. Saitou*  
The history of human populations in the Japanese Archipelago inferred from Genomewide SNP data with a special reference to the Ainu and the Ryukyuan Populations.
Journal of Human Genetics (2012) 57(12): 787-798. doi: 10.1038/jhg.2012.114. Epub 2012 Nov 8.
IF=2.365(被引用件数:48)

29) J-H. Park, T. Yamaguchi, C. Watanabe, A. Kawaguchi, K. Haneji, M. Takeda, Y-I. Kim, Y. Tomoyasu, M. Watanabe, H. Oota, T. Hanihara, H. Ishida, K. Maki, S-B. Park, R. Kimura*
Effects of an Asian-specific nonsynonymous EDAR variant on multiple dental traits.
Journal of Human Genetics (2012) 57(8): 508-514 doi: 10.1038/jhg.2012.60.
IF=2.365(被引用件数:48)

28) K. Koganebuchi#, T. Katsumura#, S. Nakagome, H. Ishida, S. Kawamura, H. Oota* The Asian Archival DNA Repository Consortium
Autosomal and Y-chromosomal STR markers reveal a close relationship between Hokkaido Ainu and Ryukyu islanders.
Anthropological Science (2012) 120(3): 199-208. DOI: 10.1537/ase.120322 [Advance Publication] Released: June 26, 2012
IF=1.042(被引用件数:13)

27) S. Nakagome, S. Mano, L. Kozlowski, J. M. Bujnicki, H. Shibata, Y. Fukumaki, J. R. Kidd, K. K. Kidd, S. Kawamura, H. Oota*
Crohn’s Disease Risk Alleles on the NOD2 Locus Have Been Maintained by Natural Selection on Standing Variation.
Molecular Biology and Evolution (2012) 29:1569-1585 doi:10.1093/molbev/mss006
IF=10.353(被引用件数:14)

26) T. Katsumura, S. Oda, K. Tsukamoto, Y. Sekiya, T. Yamashita, M. Aso, M. Hata, M. Nonaka, S. Mano, H. Ishida, H. Mitani, S. Kawamura, H. Oota*
A population genetic study on the relationship between medaka fish and the spread of wet-rice-cultivation across the Japanese archipelago.
Anthropological Science (2012) 120(1): 81-89 DOI: 10.1537/ase.110525
IF=1.042(被引用件数:4)

25) T. Hiwatashi, A. Mikami, T. Katsumura, B. Suryobroto, D. Perwitasari-Farajallah, S. Malaivijitnond, B. Siriaroonrat, H. Oota, S. Goto, S. Kawamura*
Gene conversion and purifying selection shape nucleotide variation in gibbon L/M opsin genes.
BMC Evolutionary Biology (2011) 11:312 
IF=3.521(被引用件数:20)

24) S. Nakagome, Y. Takeyama, S. Mano, S. Sakisaka, T. Matsui, S. Kawamura, H. Oota*
Population-specific susceptibility to Crohn’s disease and ulcerative colitis; dominant and recessive relative risks in the Japanese population.
Annals of Human Genetics (2010) 74:126-36 
IF=2.604(被引用件数:36)

23) H. Matsukusa, H.Oota*, K. Haneji, T. Toma, S. Kawamura, H. Ishida
A Genetic Analysis of the Sakishima Islanders Reveals No Relationship with Taiwan Aborigines but Shared Ancestry with Ainu and Main-island Japanese. 
American Journal of Physical Anthropology (2010) 142:211-23
IF=2.693(被引用件数:23)

22) T. Hiwatashi, Y. Okabe, T. Tsutsui, C. Hiramatsu, A.D. Melin, H. Oota, C.M. Schaffner, F. Aureli, L.M. Fedigan, H. Innan, S. Kawamura*
An explicit signature of balancing selection for color vision variation in New World monkeys.
Molecular Biology Evolution (2010) 27: 453-64
IF=5.510(被引用件数:63)

21) R. Kimura*, T. Yamaguchi, M. Takeda, O. Kondo, T. Toma, K. Haneji, T. Hanihara, H. Matsukusa, S. Kawamura, K. Maki, M. Osawa, H. Ishida, H. Oota
A common variation in EDAR is a genetic determinant of shovel-shaped incisors. 
American Journal of Human Genetics (2009) 85: 528-535
IF=12.303(被引用件数:132)

20) T. Katsumura, S. Oda, S. Mano, N. Suguro, K. Watanabe, H. Mitani, H. Oota*, S. Kawamura
Genetic differentiation among local populations of medaka fish (Oryzias latipes) evaluated through grid- and deme-based sampling.
Gene (2009) 443: 170-177 
IF=2.416(被引用件数:16)

19) H.R. Luo, G.S. Wu, A.J. Pakstis, L. Tong, H. Oota, K.K. Kidd, Y.P. Zhang*
Origin and dispersal of atypical aldehyde dehydrogenase ALDH2487Lys
Gene (2009) 435: 96-103 
IF=2.416(被引用件数:28)

18) Y. Matsumoto#, H. Oota#, *, Y. Asaoka, H. Nishina, K. Watanabe, J.M. Bujnicki, S. Oda, S. Kawamura, H. Mitani*
Medaka: a promising model animal for comparative population genomics.
BMC Research Notes (2009) 2: 88-97 
(被引用件数:12)

17) Y. Han, S. Gu, H. Oota, M.V. Osier, A.J. Pakstis, W.C. Speed, J.R. Kidd, K.K. Kidd*
Evidence of positive selection on a Class I ADH locus.
American Journal of Human Genetics (2007) 80: 441-456
IF=11.092(被引用件数:75)

16) H. Oota*, C.W .Dunn, W.C.Speed, A.J.Pakstis, M.A.Palmatier, J.R. Kidd, K.K. Kidd*
Conservative evolution in duplicated genes of the primate Class I ADH cluster.
Gene (2007) 392: 64-76
IF=2.871(被引用件数:17)

15) Y. Han, H. Oota, M. Osier, A. J. Pakstis, W. C. Speed, D. Goldman, A. Odunsi, F. Okonofua, S. L. B. Kajuna, N. J. Karoma, S. Kungulilo, E. Grigorenko, O. V. Zhukova, B. Bonne-Tamir, R-B. Lu, J. Parnas, L. O. Schulz, J. R. Kidd, K. K. Kidd*
Considerable haplotype diversity within the 23kb encompassing the ADH7 gene.
Alcoholism Clinical Experimental Research (2005) 29: 2091-2100 
IF=2.636(被引用件数:27)

14) H. Oota#, B. Pakendorf#, G. Weiss, W. Settheetham-Ishida, D. Tiwawech, S. Pookajorn, T. Ishida, M. Stoneking*
Recent origin and cultural reversion of a hunter-gatherer group.
PLoS Biology (2005) 3(3): e71 
IF=14.672(被引用件数:85)

13) H. Oota, A. J. Pakstis, B. Bonne-Tamir, D. Goldman, E. Grigorenko, S. L. B. Kajuna, N. J. Karoma, S. Kungulilo, R-B. Lu, K. Odunsi, F. Okonofua, O. V. Zhukova, J. R. Kidd, K. K. Kidd*
The evolution and population genetics of the ALDH2 locus: random genetic drift, selection, and low levels of recombination.
Annals of Human Genetics (2004) 68: 93-109 
IF=2.680(被引用件数:129)

12) H. Oota*, T. Kitano, F. Jin, I. Yuasa, L. Wang, S. Ueda, N. Saitou, M. Stoneking
Extreme mtDNA homogeneity in continental Asian populations.
American Journal of Physical Anthropology (2002) 18: 146-153 
IF=2.117(被引用件数:109)

11) H. Oota*, N. Saitou, S. Ueda
A large-scale analysis of human mitochondrial DNA sequences for ancient DNA data with special reference to the population history of East Eurasian.
Anthropological Science (2002) 110: 293-312
IF=0.469(被引用件数:7)

10) H. Oota, W. Settheetham-Ishida, D. Tiwawech, T. Ishida, M. Stoneking*
Human mtDNA and Y-chromosome variation is correlated with matrilocal versus patrilocal residence.
Nature Genetics (2002) 29: 20-21
IF=29.600(被引用件数:295)

9) H. Oota, K. Kurosaki, S. Pookajorn, T. Ishida*, S. Ueda
Genetic study of the Paleolithic and Neolithic Southeast Asians.
Human Biology (2001) 73: 225-231 
IF=1.664(被引用件数:29)

8) L. Wang, H. Oota, N. Saitou, F. Jin, T. Matsushita, S. Ueda*
Genetic structure of a 2500-year-old human population in China and its spatiotemporal changes
Molecular Biology and Evolution (2000) 17: 1396-1400 
IF=5.298(被引用件数:75)

7) H. Oota, N. Saitou, T. Matsushita, S. Ueda* 
Molecular genetic analysis of remains of a 2,000-year-old human population in China and its relevance for the origin of the modern Japanese population.
American Journal of Human Genetics (1999) 64:250-258 
IF=10.426(被引用件数:99)

6) Y. Nakachi, T. Hayakawa, H. Oota, K. Sumiyama, L. Wang, S. Ueda* 
Nucleotide compositional constraints on genomes generate alanine-, glycine-, and proline-rich structure in transcription factors.
Molecular Biology and Evolution (1997) 14(10): 147-160 
IF=5.249(被引用件数:46)

5) Y. Watanabe, T. Sakazume, K. Kurosaki, H. Oota, K. W. Watanabe, S. Ueda* 
No directionality of STR evolution at the HPRT locus in catarrhine primates.
Folia Primatologica (1997) 68: 350-353 
IF=0.439

4) K. Kurosaki, H. Saitoh, H. Oota, Y. Watanabe, M. Kiuchi, S. Ueda* 
Combined polymorphism associated with a 3-bp deletion in the 5′-flanking region of a tetrameric short tandem repeat at the CYP19 locus.
Japan Journal of Legal Medicine (1997) 51: 191-195 
(被引用件数:21)

3) Y. Watanabe, T. Sakazume, K. Kurosaki, H. Oota, K. W. Watanabe, S. Ueda* 
Short tandem repeat polymorphisms in Japanese macaques: their short repeat lengths and low informativeness.
Mammalian Genome (1996) 7: 383-385
IF=2.069

2) K. Kurosaki, H. Oota, H. Saitoh, M. Kiuchi, S. Ueda* 
Sequence variation found in the flanking region of a trimeric short tandem repeat at the PLA2 Locus: its considerable effect on estimating alleles.
Japan Journal of Legal Medicine (1996) 50:1-5 
IF=1.238

1) H. Oota, N. Saitou, T. Matsushita, S. Ueda*
A genetic study of 2,000-year-old human remains from Japan using mitochondrial DNA sequences.
American Journal of Physical Anthropology(1995) 98:133-145
IF=1.364(被引用件数:109)