Publications

Loss-of-functional mutation in ANGUSTIFOLIA3 causes leucine hypersensitivity and hypoxia response during Arabidopsis thaliana seedling growth.

Kawade K, Nozaki M, Horiguchi G, Mori T, Yamaguchi K, Okamoto M, Tabeta H, Shigenobu S, Hirai MY, Tsukaya H. Metabolomics. 2025 Mar 31;21(2):46. doi: 10.1007/s11306-025-02249-9. PMID: 40164829; PMCID: PMC11958482

Allotetraploid Origin and Putative Ancient Introgression in Plantago hakusanensis (Plantaginaceae).

Ishikawa N, Sakaguchi S, Hasekura C, Shipunov A, Matsuo A, Suyama Y, Tsukaya H, Ikeda H, Ito M. Ecol Evol. 2025 Mar 17;15(3):e71144. doi: 10.1002/ece3.71144. PMID: 40104632; PMCID: PMC11917114.

Functional conservation and divergence of arabidopsis VENOSA4 and human SAMHD1 in DNA repair.

Sarmiento-Mañús R, Fontcuberta-Cervera S, Kawade K, Oikawa A, Tsukaya H, Quesada V, Micol JL, Ponce MR. Heliyon. 2024 Dec 10;11(1):e41019. doi: 10.1016/j.heliyon.2024.e41019. PMID: 39801971; PMCID: PMC11720913.

Partial mycoheterotrophy in Apostasia wallichii, an early-diverging Asian tropical orchid.

Suetsugu K, Okada H, Suleiman M, Tsukaya H. Plant Biol (Stuttg). 2025 Mar 17. doi: 10.1111/plb.70004. Epub ahead of print. PMID: 40095580.

Unlikely allies: Camel crickets play a role in the seed dispersal of an Asian autotrophic shrub.

Suetsugu K, Tsukaya H. Plants, People, Planet, 1–8. https://doi.org/10.1002/ppp3.10556.

Characterization of the Arabidopsis Mutant oligocellula6-D Reveals the Importance of Leaf Initiation in Determining the Final Leaf Size.

Takeda R, Sato S, Ui T, Tsukaya H, Horiguchi G. Plant Cell Physiol. 2024 Sep 3;65(8):1310-1327. doi: 10.1093/pcp/pcae067. PMID: 38878059.

Beyond stomatal development: SMF transcription factors as versatile toolkits for land plant evolution.

Doll Y, Koga H, Tsukaya H. Quantitative Plant Biology. 2024 May 31. DOI: 10.1017/qpb.2024.6

Petal segmentation in CT images based on divide-and-conquer strategy.

Naka Y, Utsumi Y, Iwamura M, Tsukaya H, Kise K. Frontiers in Plant Science vol.15 2024 July 15. DOI: 10.3389/fpls.2024.1389902.

Expression analyses of CUP-SHAPED COTYLEDON and SHOOT MERISTEMLESS in the one-leaf plant Monophyllaea glabra reveal neoteny evolution of shoot meristem.

Nakamura S, Kinoshita A, Koga H, Tsukaya H.
Sci Rep. 2024 May 15;14(1):11148. doi: 10.1038/s41598-024-62049-4. PMID: 38750143; PMCID: PMC11096313.

Precocious cell differentiation occurs in proliferating cells in leaf primordia in Arabidopsis angustifolia3 mutant.

Ezaki K, Koga H, Takeda-Kamiya N, Toyooka K, Higaki T, Sakamoto S, Tsukaya H. Front Plant Sci. 2024 Apr 16;15:1322223. doi: 10.3389/fpls.2024.1322223. PMID: 38689848; PMCID: PMC11058843.

Decoding the leaf apical meristem of Guarea glabra Vahl (Meliaceae): insight into the evolution of indeterminate pinnate leaves.

Moriyama Y, Koga H, Tsukaya H. Sci Rep. 2024 Mar 2;14(1):5166. doi: 10.1038/s41598-024-55882-0. PMID: 38431750; PMCID: PMC10908829.

First records of non-native species Callitriche deflexa (Plantaginaceae), which was previously misidentified as C.terrestris in Japan.

Koga H, Doll Y, Ohnishi W, Tsukaya H.
Biodivers Data J. 2024 Jan 15;12:e115142. doi: 10.3897/BDJ.12.e115142. PMID: 38314126; PMCID: PMC10837795.

Cavity and entrance pore development in ant plant hypocotyls.

Tsukaya H, Ohtake Y (2023) Front Plant Sci. 2023 Sep 7;14:1234650. doi: 10.3389/fpls.2023.1234650. PMID: 37746003; PMCID: PMC10513446.

Experimental validation of the mechanism of stomatal development diversification.

Doll Y, Koga H, Tsukaya H, J Exp Bot. 2023 Sep 29;74(18):5667-5681. doi: 10.1093/jxb/erad279. PMID: 37555400; PMCID: PMC10540739.<<プレスリリース>>

Contribution of vasculature to stem integrity in Arabidopsis thaliana

Asaoka M, Sakamoto S, Gunji S, Mitsuda N, Tsukaya H, Sawa S, Hamant O, Ferjani A. Development. 2023 Feb 15;150(3):dev201156. doi: 10.1242/dev.201156. Epub 2023 Feb 6. PMID: 36746191

Oscillating flower colour changes of Causonis japonica (Thunb.) Raf. (Vitaceae) linked to sexual phase changes.

Furukawa Y, Tsukaya H, Kawakubo N. Sci Rep. 2022 Dec 1;12(1):19682. doi: 10.1038/s41598-022-24252-z. PMID: 36456651; PMCID: PMC9715941. <<プレスリリース>>

Position of meristems and the angles of the cell division plane regulate the uniqueness of lateral organ shape

Kinoshita A, Naito M, Wang Z, Inoue Y, Mochizuki A, Tsukaya H. Development. 2022 Dec 1;149(23):dev199773. doi: 10.1242/dev.199773. Epub 2022 Dec 12. PMID: 36373561; PMCID: PMC10112895.<<プレスリリース>>

Auxin and cytokinin control fate determination of cotyledons in the one-leaf plant Monophyllaea glabra

Kinoshita A, Tsukaya H. Front Plant Sci. 2022 Sep 2;13:980138. doi: 10.3389/fpls.2022.980138. PMID: 36119619; PMCID: PMC9481249.

Tissue-targeted inorganic pyrophosphate hydrolysis in a fugu5 mutant reveals that excess inorganic pyrophosphate triggers developmental defects in a cell-autonomous manner

Gunji S, Kawade K, Tabeta H, Horiguchi G, Oikawa A, Asaoka M, Hirai MY, Tsukaya H, Ferjani A. Front Plant Sci. 2022 Aug 4;13:945225. doi: 10.3389/fpls.2022.945225. PMID: 35991393; PMCID: PMC9386291.

Dynamic rearrangement and autophagic degradation of mitochondria during spermiogenesis in the liverwort Marchantia polymorpha

Norizuki T, Minamino N, Sato M, Tsukaya H, Ueda Y. Cell Reports, 2022 Jun 14;39(11):110975. doi: 10.1016/j.celrep.2022.110975. PMID: 35705033.
<<プレスリリース>>

Protein kinase MpYAK1 is involved in meristematic cell proliferation, reproductive phase change and nutrient signaling in the liverwort Marchantia polymorpha

Shinkawa H, Kajikawa M, Furuya T, Nishihama R, Tsukaya H, Kohchi T, Fukuzawa H. Plant Cell Physiol. 2022 Jun 8:pcac076. doi: 10.1093/pcp/pcac076. Epub ahead of print. PMID: 35674121.

A plant-specific DYRK kinase DYRKP coordinates cell morphology in Marchantia polymorpha

Furuya T, Shinkawa H, Kajikawa M, Nishihama R, Kohchi T, Fukuzawa H, Tsukaya H. J Plant Res. 2021 Nov;134(6):1265-1277. doi: 10.1007/s10265-021-01345-w. Epub 2021 Sep 21. PMID: 34549353; PMCID: PMC8514375.
<Issue Cover Image>

Callitriche as a potential model system for evolutionary studies on the dorsiventral distribution of stomata.

Doll Y, Koga H, Tsukaya H. Plant Signal Behav. 2021 Nov 2;16(11):1978201. doi: 10.1080/15592324.2021.1978201. Epub 2021 Sep 19. PMID: 34538209; PMCID: PMC8525970.

An auxin signaling network translates low-sugar-state input into compensated cell enlargement in the fugu5 cotyledon

Tabeta H, Watanabe S, Fukuda K, Gunji S, Asaoka M, Hirai MY, Seo M, Tsukaya H, Ferjani A. PLoS Genet. 2021 Aug 5;17(8):e1009674. doi: 10.1371/journal.pgen.1009674. PMID: 34351899; PMCID: PMC8341479.
<<プレスリリース>>

Identification of the unique molecular framework of heterophylly in the amphibious plant Callitriche palustris L

Koga H, Kojima M, Takebayashi Y, Sakakibara H, Tsukaya H. The Plant Cell, 2021 Oct 11;33(10):3272-3292. doi: 10.1093/plcell/koab192. PMID: 34312675; PMCID: PMC8505872.<<プレスリリース>> <Issue Cover Image>

An Agrobacterium-mediated stable transformation technique for the hornwort model Anthoceros agrestis

Frangedakis E, Waller M, Nishiyama T, Tsukaya H, Xu X, Yue Y, Tjahjadi M, Gunadi A, Van Eck J, Li FW, Szövényi P, Sakakibara K. New Phytol. 2021 Nov;232(3):1488-1505. doi: 10.1111/nph.17524. Epub 2021 Jul 19. PMID: 34076270; PMCID: PMC8717380. <<プレスリリース>>

Three-dimensional quantification of twisting in the Arabidopsis petiole

Otsuka Y, Tsukaya H. J Plant Res. 2021 Jul;134(4):811-819. doi: 10.1007/s10265-021-01291-7. Epub 2021 Apr 11. Erratum in: J Plant Res. 2021 Apr 22;: PMID: 33839995; PMCID: PMC8245369.

The diversity of stomatal development regulation in Callitriche is related to the intrageneric diversity in lifestyles

Doll Y, Koga H, Tsukaya H. Proc Natl Acad Sci U S A. 2021 Apr 6;118(14):e2026351118. doi: 10.1073/pnas.2026351118. PMID: 33782136.<<プレスリリース>>

Stem integrity in Arabidopsis thaliana requires a load-bearing epidermis

Asaoka M, Ooe M, Gunji S, Milani P, Runel G, Horiguchi G, Hamant O, Sawa S, Tsukaya H, Ferjani A. Development. 2021 Feb 26;148(4):dev198028. doi: 10.1242/dev.198028. PMID: 33637612.

A Role for Auxin in Triggering Lamina Outgrowth of Unifacial Leaves

Nukazuka A, Yamaguchi T, Tsukaya H. Plant Physiol. 2021 Jun 11;186(2):1013-1024. doi: 10.1093/plphys/kiab087. PMID: 33620494; PMCID: PMC8195525.　<<プレスリリース>>

Two atypical ANGUSTIFOLIA without a plant-specific C-terminus regulate gametophore and sporophyte shapes in the moss Physcomitrium (Physcomitrella) patens.

Takechi K, Nagase H, Furuya T, Hattori K, Sato Y, Miyajima K, Higuchi T, Matsuda R, Takio S, Tsukaya H, Takano H. Plant J. 2021 Mar;105(5):1390-1399. doi: 10.1111/tpj.15121. Epub 2021 Jan 6. PMID: 33280196.

A Pulse–chase EdU Method for Detection of Cell Division Orientation in Arabidopsis and Juncus prismatocarpus Leaf Primordia

Yin X, Tsukaya H
Bio-protocol 2021 Jan 5;11(1):e3882. doi: 10.21769/BioProtoc.3882. PMID: 33732770; PMCID: PMC7952930.

Metabolic Control of Gametophore Shoot Formation through Arginine in the Moss Physcomitrium patens

Kawade K, Horiguchi G, Hirose Y, Oikawa A, Hirai MY, Saito K, Fujita T,  Tsukaya H
Cell Rep. 2020 Sep 8;32(10):108127.
doi: 10.1016/j.celrep.2020.108127. PMID: 32905770.

Expression Profiles of ANGUSTIFOLIA3 and SHOOT MERISTEMLESS, Key Genes for Meristematic Activity in a One-Leaf Plant Monophyllaea glabra, Revealed by Whole-Mount In Situ Hybridization

Kinoshita A, Koga H, Tsukaya H
Front Plant Sci. 2020 Aug 12;11:1160.
doi: 10.3389/fpls.2020.01160. PMID: 32903463; PMCID: PMC7435058

A New Species of Pursegloveia (Schismatoglottideae, Araceae) from Imbak Canyon, Sabah, Malaysian Borneo.

Okada H, Tsukaya H, Suleiman M
Acta Phytotaxonomica et Geobotanica 2020 July 71(2) 157-161 https://doi.org/10.18942/apg.201921

Phylogenetics of the mycoheterotrophic genus Thismia (Thismiaceae: Dioscoreales) with a focus on the Old World taxa: delineation of novel natural groups and insights into the evolution of morphological traits

Shepeleva EA, Schelkunov MI, Hroneš M, Sochor M, Dančák M, Merckx VS, Kikuchi IA, Chantanaorrapint S, Suetsugu K, Tsukaya H, Mar SS, Luu HT, Li H-Q, Logacheva MD, Nuraliev MS
Bot. J. Linn. Soc. 2020 July 193(3) 287–315
https://doi.org/10.1093/botlinnean/boaa017

Suppression of class I compensated cell enlargement by xs2 mutation is mediated by salicylic acid signaling.

Fujikura U, Ezaki K, Horiguchi G, Seo M, Kanno Y, Kamiya Y, Lenhard M, Tsukaya H. PLoS Genet. 2020 Jun 25;16(6):e1008873.
doi: 10.1371/journal.pgen.1008873. PMID: 32584819; PMCID: PMC7343186.　

an3-Mediated Compensation Is Dependent on a Cell-Autonomous Mechanism in Leaf Epidermal Tissue

Nozaki M, Kawade K, Horiguchi G, Tsukaya H. Plant Cell Physiol. 2020 Jun 1;61(6):1181-1190. doi: 10.1093/pcp/pcaa048. PMID: 32321167　

Dimorphic Leaf Development of the Aquatic Plant Callitriche palustris L. Through Differential Cell Division and Expansion

Koga H, Doll Y, Hashimoto K, Toyooka K, Tsukaya H.
Front Plant Sci. 2020 Mar 10;11:269. doi: 10.3389/fpls.2020.00269. PMID: 32211013; PMCID: PMC7076196.　

Quantitative Imaging Reveals Distinct Contributions of SnRK2 and ABI3 in Plasmodesmatal Permeability in Physcomitrella patens

Tomoi T, Kawade K, Kitagawa M, Sakata Y,  Tsukaya H, Fujita T. Plant Cell Physiol. 2020 May 1;61(5):942-956. doi: 10.1093/pcp/pcaa021. PMID: 32101300　

Hybrid of Osmunda japonica and O. lancea on Mt. Tenjo, Kozu Island, Izu Islands, Japan

Tsutsumi C, Hirayama Y, Yamamoto K, Kato H, Murakami N, Tsukaya H, Yatabe-Kakugawa Y, Bull. Natl. Mus. Nat. Sci., Ser. B (2015) August 21, 2015 41(3):99-105   

Comparative analysis of the RTFL peptide family on the control of plant organogenesis

Guo P, Yoshimura A, Ishikawa N, Yamaguchi T, Guo Y, Tsukaya H. J Plant Res. 2015 May;128(3):497-510.
doi: 10.1007/s10265-015-0703-1. Epub 2015 Feb 21. PMID: 25701405; PMCID: PMC4408365   

Oriented cell division shapes carnivorous pitcher leaves of Sarracenia purpurea

Fukushima K, Fujita H, Yamaguchi T, Kawaguchi M, Tsukaya H, Hasebe M. Nat Commun. 2015 Mar 16;6:6450. doi: 10.1038/ncomms7450. PMID: 25774486; PMCID: PMC4382701   

Arundina graminifolia var. revoluta (Arethuseae, Orchidaceae) has fern-type rheophyte characteristics in the leaves

Yorifuji E, Ishikawa N, Okada H, Tsukaya H. J Plant Res. 2015 Mar;128(2):239-47. doi: 10.1007/s10265-014-0689-0. Epub 2014 Dec 14. PMID: 25502073   <Issue Cover Image>

Intraspecific comparative analyses of metabolites between diploid and tetraploid Arabidopsis thaliana and Pyrus communis

Tsukaya H, Sawada Y, Oikawa A, Shiratake K, Isuzugawa K, Saito K, Hirai MY, New Negatives in Plant Science, 2015, 1–2: 53-61, https://doi.org/10.1016/j.neps.2015.06.001   

Detection of the Cell Proliferation Zone in Leaves by Using EdU

Nakayama H, Kawade K, Tsukaya H, Kimura S. Bio-protocol 5(18): e1600. (2015).DOI: 10.21769/BioProtoc.1600  

Lineage diversification and hybridization in the Cayratia japonica-Cayratia tenuifolia species complex

Ishikawa N, Ikeda H, Yi TS, Takabe-Ito E, Okada H, Tsukaya H. Mol Phylogenet Evol. 2014 Jun;75:227-38. doi: 10.1016/j.ympev.2014.01.027. Epub 2014 Feb 7. PMID: 24508603  

Didymoplexiella trichechus (J.J. Sm.) Garay and a new variety of Didymoplexis cornutaJ.J. Sm (Orchidaceae) in Borneo

Tsukaya H, Suleiman M, Okada H (2014) Acta Phytotax. Geobot.65: 105-110. https://doi.org/10.18942/apg.KJ00009406726  

Acropetal leaflet initiation of Eschscholzia californica is achieved by constant spacing of leaflets and differential growth of leaf

Ikeuchi M, Igarashi H, Okada K, Tsukaya H. Planta. 2014 Jul;240(1):125-35. doi: 10.1007/s00425-014-2071-9. Epub 2014 Apr 10. PMID: 24718490  

A new variety of Thismia hexagona Dančák, Hroneš, Koblová et Sochor (Thismiaceae) from Sabah, Borneo, Malaysia

Tsukaya H, Suleiman M, Okada H (2014) Acta Phytotax. Geobot. 65: 141-145. DOI: 10.18942/apg.KJ00009868523  

Two new species of Sciaphila (Triuridaceae) from Sarawak (Borneo, Malaysia)

Tsukaya H, Suetsugu K (2014) Phytotaxa 170: 283-290. doi:http://dx.doi.org/10.11646/phytotaxa.170.4.6.  

The conflict between cell proliferation and expansion primarily affects stem organogenesis in Arabidopsis

Maeda S, Gunji S, Hanai K, Hirano T, Kazama Y, Ohbayashi I, Abe T, Sawa S, Tsukaya H, Ferjani A. Plant Cell Physiol. 2014 Nov;55(11):1994-2007. doi: 10.1093/pcp/pcu131. Epub 2014 Sep 22. PMID: 25246492  
<Issue Cover Image>

Nitrogen dioxide regulates organ growth by controlling cell proliferation and enlargement in Arabidopsis

Takahashi M, Furuhashi T, Ishikawa N, Horiguchi G, Sakamoto A, Tsukaya H, Morikawa H. New Phytol. 2014 Mar;201(4):1304-1315. doi: 10.1111/nph.12609. Epub 2013 Dec 19. PMID: 24354517  

A new species of Aridarum (Araceae: Schismatoglottideae) from West Kalimantan, Indonesian Borneo

Okada H, Tsukaya H. (2013) Acta Phytotax. Geobot. 63: 71-75. DOI: https://doi.org/10.18942/apg.KJ00008580361  

The unique function of the Arabidopsis circadian clock gene PRR5 in the regulation of shade avoidance response

Takase M, Mizoguchi T, Kozuka T, Tsukaya H. Plant Signal Behav. 2013 Apr;8(4):e23534. doi: 10.4161/psb.23534. Epub 2013 Jan 18. PMID: 23333981; PMCID: PMC7030191.  

A new species of Lecanorchis Blume (Orchidaceae, Vanilloideae) from Kalimantan, Borneo

Tsukaya H, Okada H. (2013) Syst. Bot. 38: 69-74.   

ANGUSTIFOLIA3 signaling coordinates proliferation between clonally distinct cells in leaves

Kawade K, Horiguchi G, Usami T, Hirai MY, Tsukaya H.  Curr Biol. 2013 May 6;23(9):788-92. doi: 10.1016/j.cub.2013.03.044. Epub 2013 Apr 18. PMID: 23602479. 

Two new species of Sciaphila Blume (Triuridaceae) from Kalimantan, Borneo, with a new record of S. thaidanica from Borneo

Tsukaya H, Okada H. (2013) Syst. Bot. 38: 69-74. DOI: https://doi.org/10.1600/036364413X670476  

Precocious progression of tissue maturation instructs basipetal initiation of leaflets in Chelidonium majus subsp. asiaticum (Papaveraceae)

Ikeuchi M, Tatematsu K, Yamaguchi T, Okada K, Tsukaya H. Am J Bot. 2013 Jun;100(6):1116-26. doi: 10.3732/ajb.1200560. Epub 2013 May 27. PMID: 23711907   

The ATM-dependent DNA damage response acts as an upstream trigger for compensation in the fas1 mutation during Arabidopsis leaf development

Hisanaga T, Ferjani A, Horiguchi G, Ishikawa N, Fujikura U, Kubo M, Demura T, Fukuda H, Ishida T, Sugimoto K, Tsukaya H. Plant Physiol. 2013 Jun;162(2):831-41. doi: 10.1104/pp.113.216796. Epub 2013 Apr 24. PMID: 23616603; PMCID: PMC3668073.    

Enhanced cell expansion in a KRP₂ overexpressor is mediated by increased V-ATPase activity

Ferjani A, Ishikawa K, Asaoka M, Ishida M, Horiguchi G, Maeshima M, Tsukaya H. Plant Cell Physiol. 2013 Dec;54(12):1989-98. doi: 10.1093/pcp/pct138. Epub 2013 Sep 24. PMID: 24068796.  

Promotion of chloroplast proliferation upon enhanced post-mitotic cell expansion in leaves

Kawade K, Horiguchi G, Ishikawa N, Hirai MY, Tsukaya H. BMC Plant Biol. 2013 Sep 28;13:143. doi: 10.1186/1471-2229-13-143. PMID: 24074400; PMCID: PMC3849334.  

Does ploidy level directly control cell size? Counterevidence from Arabidopsis genetics

Tsukaya H. PLoS One. 2013 Dec 12;8(12):e83729. doi: 10.1371/journal.pone.0083729. PMID: 24349549; PMCID: PMC3861520.  

Regulation of pyrophosphate levels by H⁺-PPase is central for proper resumption of early plant development

Ferjani A, Segami S, Horiguchi G, Sakata A, Maeshima M, Tsukaya H. Plant Signal Behav. 2012 Jan;7(1):38-42. doi: 10.4161/psb.7.1.18573. PMID: 22301965; PMCID: PMC3357364   

A new species of Thismia (Thismiaceae) from West Kalimantan, Borneo

Tsukaya H, Okada H. (2012) Syst. Bot. 37: 53-57.　 <Issue Cover Image>

Burmannia bengkuluensis sp. nov. (Burmanniaceae) from Sumatra

Tsukaya H, Darnaedi, D. (2012) Nord. J. Bot. 30: 159-162 DOI: https://doi.org/10.1111/j.1756-1051.2011.01360.x  

Flowering phenology of the Nine-year plant, Strobilanthes cernua (Acanthaceae)

Tsukaya H, Kakishima S, Hidayat A, Murata J, Okada H. (2012) TROPICS 20: 79-85 DOI:  https://doi.org/10.3759/tropics.20.79 

A new variety of Didymoplexis cornuta (Orchidaceae) from West Kalimantan, Borneo

Tsukaya H, Okada H. (2012) Acta Phytotax. Geobot. 62: 89-93.  

A hypothesis on the origin of genetic heterozygosity in diploids and triploids in Japanese Cayratia japonica species complex (Vitaceae)

Tsukaya H, Ishikawa N, Okada H. J Plant Res. 2012 Jul;125(4):475-81. doi: 10.1007/s10265-011-0467-1. Epub 2011 Dec 27. PMID: 22200910. 

Acquisition and diversification of cladodes: leaf-like organs in the genus Asparagus

Nakayama H, Yamaguchi T, Tsukaya H. Plant Cell. 2012 Mar;24(3):929-40. doi: 10.1105/tpc.111.092924. Epub 2012 Mar 13. PMID: 22415273; PMCID: PMC3336132.  

Stable establishment of cotyledon identity during embryogenesis in Arabidopsis by ANGUSTIFOLIA3 and HANABA TARANU

Kanei M, Horiguchi G, Tsukaya H. Development. 2012 Jul;139(13):2436-46. doi: 10.1242/dev.081547. PMID: 22669825  

Berberine enhances defects in the establishment of leaf polarity in asymmetric leaves1 and asymmetric leaves2 of Arabidopsis thaliana

Nakagawa A, Takahashi H, Kojima S, Sato N, Ohga K, Cha BY, Woo JT, Nagai K, Horiguchi G, Tsukaya H, Machida Y, Machida C. Plant Mol Biol. 2012 Aug;79(6):569-81. doi: 10.1007/s11103-012-9929-7. Epub 2012 Jun 10. PMID: 22684430; PMCID: PMC3402677.  

A color variation of epirixanthes species (Polygalaceae) found in West Kalimantan, Borneo, Indonesia

Tsukaya H, Okada H. (2012) Acta Phytotax. Geobot. 62: 95-97.  DOI: https://doi.org/10.18942/apg.KJ00008111421

Cladodes, leaf-like organs in Asparagus, show the significance of co-option of pre-existing genetic regulatory circuit for morphological diversity of plants

Nakayama H, Yamaguchi T, Tsukaya H. Plant Signal Behav. 2012 Aug;7(8):961-4. doi: 10.4161/psb.20913. Epub 2012 Jul 27. PMID: 22836497; PMCID: PMC3474695.  

ROTUNDIFOLIA4 regulates cell proliferation along the body axis in Arabidopsis shoot

Ikeuchi M, Yamaguchi T, Kazama T, Ito T, Horiguchi G, Tsukaya H. Plant Cell Physiol. 2011 Jan;52(1):59-69. doi: 10.1093/pcp/pcq138. Epub 2010 Sep 8. PMID: 20826883; PMCID: PMC3023849.  

ANGUSTIFOLIA3 plays roles in adaxial/abaxial patterning and growth in leaf morphogenesis

Horiguchi G, Nakayama H, Ishikawa N, Kubo M, Demura T, Fukuda H, Tsukaya H. Plant Cell Physiol. 2011 Jan;52(1):112-24. doi: 10.1093/pcp/pcq178. Epub 2010 Nov 21. PMID: 21097896.  

Infrared thermography and odour composition of the Amorphophallus gigas (Araceae) inflorescence: the cooling effect of the odorous liquid

Kakishima S, Terajima Y, Murata J, Tsukaya H. Plant Biol (Stuttg). 2011 May;13(3):502-7. doi: 10.1111/j.1438-8677.2010.00399.x. Epub 2010 Sep 14. PMID: 21489101.  

Kalimantanorchis: a new genus of mycotrophic orchid from West Kalimantan, Borneo

Tsukaya H, Nakajima M, Okada H. (2011) Syst. Bot. 36: 49-52. DOI: https://doi.org/10.1600/036364411X553117  

Differential contributions of ribosomal protein genes to Arabidopsis thaliana leaf development

Horiguchi G, Mollá-Morales A, Pérez-Pérez JM, Kojima K, Robles P, Ponce MR, Micol JL, Tsukaya H. Plant J. 2011 Mar;65(5):724-36. doi: 10.1111/j.1365-313X.2010.04457.x. Epub 2011 Jan 19. PMID: 21251100.  

An assumed rheophytic orchid: Bulbophyllum rheophyton n.sp., from Borneo

Vermeulen J, Tsukaya H. (2011) Plant Syst. Evol. 293:71–73 DOI https://doi.org/10.1007/s00606-011-0420-8 

Keep an eye on PPi: the vacuolar-type H+-pyrophosphatase regulates postgerminative development in Arabidopsis

Ferjani A, Segami S, Horiguchi G, Muto Y, Maeshima M, Tsukaya H. Plant Cell. 2011 Aug;23(8):2895-908. doi: 10.1105/tpc.111.085415. Epub 2011 Aug 23. PMID: 21862707; PMCID: PMC3180799  

Key proliferative activity in the junction between the leaf blade and leaf petiole of Arabidopsis

Ichihashi Y, Kawade K, Usami T, Horiguchi G, Takahashi T, Tsukaya H. Plant Physiol. 2011 Nov;157(3):1151-62. doi: 10.1104/pp.111.185066. Epub 2011 Aug 31. PMID: 21880932; PMCID: PMC3252173.  

ANGUSTIFOLIA, a plant homolog of CtBP/BARS, functions outside the nucleus

Minamisawa N, Sato M, Cho KH, Ueno H, Takechi K, Kajikawa M, Yamato KT, Ohyama K, Toyooka K, Kim GT, Horiguchi G, Takano H, Ueda T, Tsukaya H. Plant J. 2011 Dec;68(5):788-99. doi: 10.1111/j.1365-313X.2011.04731.x. Epub 2011 Sep 14. PMID: 21801251   

Plant Elongator regulates auxin-related genes during RNA polymerase II transcription elongation

Nelissen H, De Groeve S, Fleury D, Neyt P, Bruno L, Bitonti MB, Vandenbussche F, Van der Straeten D, Yamaguchi T, Tsukaya H, Witters E, De Jaeger G, Houben A, Van Lijsebettens M. Proc Natl Acad Sci U S A. 2010 Jan 26;107(4):1678-83. doi: 10.1073/pnas.0913559107. Epub 2010 Jan 8. PMID: 20080602; PMCID: PMC2824411.   

Mechanisms of leaf tooth formation in Arabidopsis 

Kawamura E, Horiguchi G, Tsukaya H. Plant J. 2010 May;62(3):429-441. doi: 10.1111/j.1365-313X.2010.04156.x. Epub 2010 Feb 1. PMID: 20128880.   

Expression patterns of AaDL, a CRABS CLAW ortholog in Asparagus asparagoides (Asparagaceae), demonstrate a stepwise evolution of CRC/DL subfamily of YABBY genes 

Nakayama H, Yamaguchi T, Tsukaya H. Am J Bot. 2010 Apr;97(4):591-600. doi: 10.3732/ajb.0900378. Epub 2010 Mar 9. PMID: 21622421.  <Issue Cover Image>

The mechanism of cell cycle arrest front progression explained by a KLUH/CYP78A5-dependent mobile growth factor in developing leaves of Arabidopsis thaliana

Kazama T, Ichihashi Y, Murata S, Tsukaya H. Plant Cell Physiol. 2010 Jun;51(6):1046-54. doi: 10.1093/pcp/pcq051. Epub 2010 Apr 15. PMID: 20395288  

Distinct regulation of adaxial-abaxial polarity in anther patterning in rice

Toriba T, Suzaki T, Yamaguchi T, Ohmori Y, Tsukaya H, Hirano HY. Plant Cell. 2010 May;22(5):1452-62. doi: 10.1105/tpc.110.075291. Epub 2010 May 28. PMID: 20511295; PMCID: PMC2899876  <Issue Cover Image>

Genetic framework for flattened leaf blade formation in unifacial leaves of Juncus prismatocarpu

Yamaguchi T, Yano S, Tsukaya H. Plant Cell 2010 July;22(7): 2141–2155.Doi: 10.1105/tpc.110.076927 Epub 2010 July 20 <Issue Cover Image>

Involvement of auxin and brassinosteroid in the regulation of petiole elongation under the shade

Kozuka T, Kobayashi J, Horiguchi G, Demura T, Sakakibara H, Tsukaya H, Nagatani A. Plant Physiol. 2010 Aug;153(4):1608-1618. doi: 10.1104/pp.110.156802. Epub 2010 Jun 10. PMID: 20538889; PMCID: PMC2923899.   

Characterization of EMU, the Arabidopsis homolog of the yeast THO complex member HPR1

Furumizu C, Tsukaya H, Komeda Y. RNA. 2010 Sep;16(9):1809-1817. doi: 10.1261/rna.2265710. Epub 2010 Jul 28. PMID: 20668032; PMCID: PMC2924540  

Non-cell-autonomously coordinated organ size regulation in leaf development

Kawade K, Horiguchi G, Tsukaya H. Development. 2010 Dec;137(24):4221-4227. doi: 10.1242/dev.057117. Epub 2010 Nov 10. PMID: 21068059 （掲載号のIN THIS ISSUEで紹介）   

692. PHAIUS HEKOUENSIS: Orchidaceae

Tsukaya H, Nakajima M, Wu S-G. Curtis’s Bot. Mag. 2010 Dec; 27(4): 339-347 Doi: 10.1111/j.1467-8748.2010.01713.x Epub 2010 Dec 01 

A New species of Piptospatha (Araceae: Schismatoglottideae) from West Kalimantan, Indonesian Borneo  

Okada H, Tsukaya H. (2010). Acta Phytotax. Geobot. 61: 87-92 doi: https://doi.org/10.18942/apg.KJ00009281705  

Chemical Identity of a Rotting Animal-Like Odor Emitted from the Inflorescence of the Titan Arum (Amorphophallus titanum)

Shirasu M, Fujioka K, Kakishima S, Nagai S, Tomizawa Y, Tsukaya H, Murata J, Manome Y, Touhara K. Bioscience, Biotechnology, and Biochemistry (2010) 74:12, 2550-2554, DOI: 10.1271/bbb.100692.  

The more and smaller cells mutants of Arabidopsis thaliana identify novel roles for SQUAMOSA PROMOTER BINDING PROTEIN-LIKE genes in the control of heteroblasty 

Usami T, Horiguchi G, Yano S, Tsukaya H. Development. 2009 Mar;136(6):955-964. doi: 10.1242/dev.028613. Epub 2009 Feb 11. PMID: 19211679 

Coordination of cell proliferation and cell expansion mediated by ribosome-related processes in the leaves of Arabidopsis thaliana 

Fujikura U, Horiguchi G, Ponce MR, Micol JL, Tsukaya H. Plant J. 2009 Aug;59(3):499-508. doi: 10.1111/j.1365-313X.2009.03886.x. Epub 2009 Apr 6. Erratum in: Plant J. 2009 Dec;60(5):930. PMID: 19392710  

Impact of segmental chromosomal duplications on leaf size in the grandifolia-D mutants of Arabidopsis thaliana 

Horiguchi G, Gonzalez N, Beemster GT, Inzé D, Tsukaya H. Plant J. 2009 Oct;60(1):122-133. doi: 10.1111/j.1365-313X.2009.03940.x. Epub 2009 Jun 5. PMID: 19508432 

Molecular evidence of reticulate evolution in the subgenus Plantago (Plantaginaceae) 

Ishikawa N, Yokoyama J, Tsukaya H. Am J Bot. 2009 Sep;96(9):1627-1635. doi: 10.3732/ajb.0800400. Epub 2009 Aug 13. PMID: 21622349 

The bHLH transcription factor SPATULA controls final leaf size in Arabidopsis thaliana 

Ichihashi Y, Horiguchi G, Gleissberg S, Tsukaya H. Plant Cell Physiol. 2010 Feb;51(2):252-61. doi: 10.1093/pcp/pcp184. Epub 2009 Dec 29. PMID: 20040585 

Phylogenetic position of Oxygyne shinzatoi (Burmanniaceae) inferred from 18S rDNA sequences.  

Yokoyama J, Koizumi Y, Yokota M, Tsukaya H. J Plant Res. 2008 Jan;121(1):27-32. doi: 10.1007/s10265-007-0136-6. Epub 2007 Dec 20. Erratum in: J Plant Res. 2008 Jul;121(4):449. PMID: 18095056 <Issue Cover Image>

Taxonomic status of Monotropastrum humile, with special reference to M. humile var. glaberrimum (Ericaceae, Monotropoideae)

Tsukaya H, Yokoyama J, Imaichi R, Ohba H. J Plant Res. 2008 May;121(3):271-278. doi: 10.1007/s10265-008-0157-9. Epub 2008 Apr 4. PMID: 18389172

Isolation and characterization of the Larix gmelinii ANGUSTIFOLIA (LgAN) gene

Lin X, Minamisawa N, Takechi K, Zhang W, Sato H, Takio S, Tsukaya H, Takano H. Planta. 2008 Sep;228(4):601-608. doi: 10.1007/s00425-008-0762-9. Epub 2008 Jun 17. PMID: 18560884

Characterization of a dehydrogenase motif and an uORF in Arabidopsis ANGUSTIFOLIA gene 

Cho KH, Tsukaya H, Kim GT. Plant Biotech. 2008 Jun; 25(4): 365-368. DOI https://doi.org/10.5511/plantbiotechnology.25.365 Epub 2008 Jun 25 

Oxygyne yamashitae, a new species of Thismiaceae from Yaku Island, Japan  

Yahara T., Tsukaya H. Acta Phytotax. Geobot. 2008 July; 59(2): 97-104. DOI https://doi.org/10.18942/apg.KJ00005012322. Epub 2008 July 30

AtMap1: a DNA microarray for genomic deletion mapping in Arabidopsis thaliana 

Nagano AJ, Fukazawa M, Hayashi M, Ikeuchi M, Tsukaya H, Nishimura M, Hara-Nishimura I. Plant J. 2008 Dec;56(6):1058-1065. doi: 10.1111/j.1365-313X.2008.03656.x. Epub 2008 Sep 19. PMID: 18702675 

Dissection of enhanced cell expansion processes in leaves triggered by a defect in cell proliferation, with reference to roles of endoreduplication 

Fujikura U, Horiguchi G, Tsukaya H. Plant Cell Physiol. 2007 Feb;48(2):278-86. doi: 10.1093/pcp/pcm002. Epub 2007 Jan 6. PMID: 17205970.  

Novel receptor-like kinase ALE2 controls shoot development by specifying epidermis in Arabidopsis

Tanaka H, Watanabe M, Sasabe M, Hiroe T, Tanaka T, Tsukaya H, Ikezaki M, Machida C, Machida Y. Development. 2007 May;134(9):1643-52. doi: 10.1242/dev.003533. Epub 2007 Mar 21. PMID: 17376810

Morphological variation in leaf shape in Ainsliaea apiculata with special reference to the endemic characters of populations on Yakushima Island, Japan

Tsukaya H, Tsujino R, Ikeuchi M, Isshiki Y, Kono M, Takeuchi T, Araki T.  J Plant Res. 2007 May;120(3):351-8. doi: 10.1007/s10265-007-0079-y. Epub 2007 Apr 3. PMID: 17404687 <Issue Cover Image>

Taxonomic notes on Cayratia tenuifolia (Wight & Arn.) Gagnep., Vitaceae

Okada, H., Tsukaya, H., Okamoto, M. Acta Phytotax. Geobot. 2007 58: 51-55. DOI https://doi.org/10.18942/apg.KJ00004609392 

Analysis of leaf development in fugu mutants of Arabidopsis reveals three compensation modes that modulate cell expansion in determinate organs

Ferjani A, Horiguchi G, Yano S, Tsukaya H. Plant Physiol. 2007 Jun;144(2):988-999. doi: 10.1104/pp.107.099325. Epub 2007 Apr 27. PMID: 17468216; PMCID: PMC1914195 

DRL₁ regulates adaxial leaf patterning and shoot apical meristem activity in Arabidopsis

Cho K-H, Choi H, Seki M, Jun SE, Yi YB, Shinozaki K, Tsukaya H, Kim G-T. J. Plant Biol. 2007 Aug; 50(4): 467-474. DOI https://doi.org/10.1007/BF03030684 

Genetic relationship between angustifolia3 and extra-small sisters highlights novel mechanisms controlling leaf size

Fujikura U, Horiguchi G, Tsukaya H. Plant Signal Behav. 2007 Sep;2(5):378-380. doi: 10.4161/psb.2.5.4525. PMID: 19704605; PMCID: PMC2634218.

Structurally related Arabidopsis ANGUSTIFOLIA is functionally distinct from the transcriptional corepressor CtBP 

Stern MD, Aihara H, Cho KH, Kim GT, Horiguchi G, Roccaro GA, Guevara E, Sun HH, Negeri D, Tsukaya H, Nibu Y. Dev Genes Evol. 2007 Dec;217(11-12):759-769. doi: 10.1007/s00427-007-0186-8. Epub 2007 Oct 31. PMID: 17972097

Chromosomal characteristics of Oxygyne shinzatoi (Burmanniaceae), and its phylogenetic significance

Tsukaya H, Yokota M, Okada H. Acta Phytotax. Geobot. 2007 Nov 58(2-3):100-106. DOI https://doi.org/10.18942/apg.KJ00004808384 Epub 2007 Nov. 30 

BIN₄, a novel component of the plant DNA topoisomerase VI complex, is required for endoreduplication in Arabidopsis

Breuer C, Stacey NJ, West CE, Zhao Y, Chory J, Tsukaya H, Azumi Y, Maxwell A, Roberts K, Sugimoto-Shirasu K. Plant Cell. 2007 Nov;19(11):3655-3668. doi: 10.1105/tpc.107.054833. Epub 2007 Nov 30. PMID: 18055605; PMCID: PMC2174874

Coordination of cell proliferation and cell expansion in the control of leaf size in Arabidopsis thaliana 

Horiguchi G, Ferjani A, Fujikura U, Tsukaya H. J Plant Res. 2006 Jan;119(1):37-42. doi: 10.1007/s10265-005-0232-4. Epub 2005 Nov 12. PMID: 16284709

Gravitropism in leaves of Arabidopsis thaliana (L.) Heynh.  

Mano E, Horiguchi G, Tsukaya H. Plant Cell Physiol. 2006 Feb;47(2):217-23. doi: 10.1093/pcp/pci237. Epub 2005 Dec 11. PMID: 16344262

A comparative study on the anatomy and development of different shapes of domatia in Cinnamomum camphora (Lauraceae) 

Nishida S, Tsukaya H, Nagamasu H, Nozaki M. Ann Bot. 2006 Apr;97(4):601-10. doi: 10.1093/aob/mcl009. Epub 2006 Jan 30. PMID: 16446284; PMCID: PMC2803664

Leaf-shape variation of Paederia foetida in Japan: reexamination of the small, narrow leaf form from Miyajima Island 

Tsukaya H, Imaichi R, Yokoyama J. J Plant Res. 2006 Jul;119(4):303-8. doi: 10.1007/s10265-006-0272-4. Epub 2006 Apr 5. PMID: 16596324

Arabidopsis mutants by activation tagging in which photosynthesis genes are expressed in dedifferentiated calli

Niwa Y, Goto S, Nakano T, Sakaiya M, Hirano T, Tsukaya H, Komeda Y, Kobayashi H. Plant Cell Physiol. 2006 Mar;47(3):319-31. doi: 10.1093/pcp/pci242. PMID: 16597626 

Evaluation of morphological and molecular variation in Plantago asiatica var. densiuscula, with special reference to the systematic treatment of Plantago asiatica var. Yakusimensis 

Ishikawa N, Yokoyama J, Ikeda H, Takabe E, Tsukaya H. J Plant Res. 2006 Jul;119(4):385-95. doi: 10.1007/s10265-006-0286-y. Epub 2006 Jun 14. PMID: 16773281 <Issue Cover Image> 

Large-scale histological analysis of leaf mutants using two simple leaf observation methods: identification of novel genetic pathways governing the size and shape of leaves 

Horiguchi G, Fujikura U, Ferjani A, Ishikawa N, Tsukaya H. Plant J. 2006 Nov;48(4):638-44. doi: 10.1111/j.1365-313X.2006.02896.x. PMID: 17076802 <Issue Cover Image> 

Molecular identification of the mycorrhizal fungi of the epiparasitic plant Monotropastrum humile var. glaberrimum (Ericaceae) 

Yokoyama J, Fukuda T, Tsukaya H.J Plant Res. 2005 Feb;118(1):53-56. doi: 10.1007/s10265-004-0188-9. Epub 2005 Jan 14. PMID: 15650809

Molecular variation of Spiranthes sinensis (Orchidaceae) in Japan, with special reference to systematic treatment of seasonally differentiated groups and a dwarf form, f. gracilis, from Yakushima Island 

Tsukaya H. J Plant Res. 2005 Feb;118(1):13-8. doi: 10.1007/s10265-004-0186-y. Epub 2005 Jan 15. PMID: 15654504

The different growth responses of the Arabidopsis thaliana leaf blade and the petiole during shade avoidance are regulated by photoreceptors and sugar 

Kozuka T, Horiguchi G, Kim GT, Ohgishi M, Sakai T, Tsukaya H. Plant Cell Physiol. 2005 Jan;46(1):213-223. doi: 10.1093/pcp/pci016. Epub 2005 Jan 19. PMID: 15659441

Characterization of a member of the AN subfamily, IAN, from Ipomoea nil 

Cho KH, Shindo T, Kim GT, Nitasaka E, Tsukaya H. Plant Cell Physiol. 2005 Jan;46(1):250-255. doi: 10.1093/pcp/pci020. Epub 2005 Jan 19. PMID: 15659438

Large-scale general collection of wild-plant DNA in Mustang, Nepal 

Tsukaya H, Iokawa Y, Kondo M, Ohba H. J Plant Res. 2005 Feb;118(1):57-60. doi: 10.1007/s10265-005-0196-4. Epub 2005 Feb 3. PMID: 15690105

CYP90C1 and CYP90D1 are involved in different steps in the brassinosteroid biosynthesis pathway in Arabidopsis thaliana 

Kim GT, Fujioka S, Kozuka T, Tax FE, Takatsuto S, Yoshida S, Tsukaya H. Plant J. 2005 Mar;41(5):710-721. doi: 10.1111/j.1365-313X.2004.02330.x. Epub 2005 Feb 02. PMID: 15703058

The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana

Horiguchi G, Kim GT, Tsukaya H. Plant J. 2005 Jul;43(1):68-78. doi: 10.1111/j.1365-313X.2005.02429.x. PMID: 15960617

Thismia mullerensis (Burmanniaceae), a new species from Muller Range, Central Kalimantan

Tsukaya H, Okada H. Acta Phytotax. Geobot., 2005 Aug; 56(2):129-133, doi: https://doi.org/10.18942/apg.KJ00004623238, Epub 2005 Aug 20 <Issue cover image>

Chromosome Observations in species of Cayratia (Vitaceae). II. intraspecific polyploidy in C. trifolia

Okada H, Tsukaya H, Mohamed M, Acta Phytotax. Geobot. 2005 Aug; 56(2):203-206. doi:https://doi.org/10.18942/apg.KJ00004623245, Epub 2005 Aug 20

A new species of Impatiens (Balsaminaceae) from Mt. Kinabalu, Borneo 

Akiyama S, Ohba H, Ikeda H, Tsukaya H, Mohamed M. J. Jap. Bot.2005 Oct; 80(5): 266-270

A cytotaxonomic study of five species of Impatiens (Balsaminaceae) in Java and Borneo, Malesia

Ikeda H, Akiyama S, Tsukaya H, Mohamed M, Darnaedi D. J. Jap. Bot.2005 Oct;80(5): 271-277

Didymoplexiella cinnabarina (Orchidaceae): a new species from Muller Range, Central Kalimantan, Indonesia 

Tsukaya H, Nakajima M, Okada H. Acta Phytotax. Geobot. 2005 Dec; 56(3):207-212. doi:https://doi.org/10.18942/apg.KJ00004623252. Epub 2005 Dec 26 <Issue Cover Image>

Overexpression of a novel small peptide ROTUNDIFOLIA4 decreases cell proliferation and alters leaf shape in Arabidopsis thaliana

Narita NN, Moore S, Horiguchi G, Kubo M, Demura T, Fukuda H, Goodrich J, Tsukaya H. Plant J. 2004 May;38(4):699-713. doi: 10.1111/j.1365-313X.2004.02078.x. PMID: 15125775

A novel feature of structural variegation in leaves of the tropical plant Schismatoglottis calyptrate

Tsukaya H, Okada H, Mohamed M. J Plant Res. 2004 Dec;117(6):477-480. doi: 10.1007/s10265-004-0179-x. Epub 2004 Nov 5. PMID: 15538654

Gene flow between Impatiens radicans and I. javensis (Balsaminaceae) in Gunung Pangrango, central Java, Indonesia 

Tsukaya H. Am J Bot. 2004 Dec;91(12):2119-2123. doi: 10.3732/ajb.91.12.2119. PMID: 21652359

Phylogenetic relationships among species in the genera Chisocheton and Guarea that have unique indeterminate leaves as inferred from sequences of chloroplast DNA

Fukuda T, Yokoyama J, Tsukaya H. Int. J. Plant Sci. 2003 Jan; 164(1):13-24. doi: https://doi.org/10.1086/344741

The BLADE-ON-PETIOLE 1 gene controls leaf pattern formation through the modulation of meristematic activity in Arabidopsis

Ha CM, Kim GT, Kim BC, Jun JH, Soh MS, Ueno Y, Machida Y, Tsukaya H, Nam HG. Development. 2003 Jan;130(1):161-172. doi: 10.1242/dev.00196. PMID: 12441300.

Intra-specific polyploidy and possible of occurrence of some genetic types for pollen development in Cayratia japonica, Vitaceae

Okada H, Tsukaya H, Okamoto M. Acta Phytotax. Geobot. 2003 Jun; 54 (1):69-75. doi:https://doi.org/10.18942/apg.KJ00004623207

Morphological and molecular variation in Mitchella undulata, with special reference to the systematic treatment of the dwarf form from Yakushima

Yokoyama J, Fukuda T, Tsukaya H. J Plant Res. 2003 Aug;116(4):309-315. doi: 10.1007/s10265-003-0105-7. Epub 2003 Jun 19. PMID: 12820020.

Enhanced formation of flowers in salt-stressed Arabidopsis after genetic engineering of the synthesis of glycine betaine

Sulpice R, Tsukaya H, Nonaka H, Mustardy L, Chen TH, Murata N. Plant J. 2003 Oct;36(2):165-176. doi: 10.1046/j.1365-313x.2003.01873.x. PMID: 14535882

Hybridization and introgression between Callicarpa japonica and C. mollis (Verbenaceae) in central Japan, as inferred from nuclear and chloroplast DNA sequences

Tsukaya H, Fukuda T, Yokoyama J. Mol Ecol. 2003 Nov;12(11):3003-3011. doi: 10.1046/j.1365-294x.2003.01961.x. PMID: 14629381

Chromosome observations in Cayratia, Vitaceae

Okada H, Tsukaya H. Acta Phytobot. Geobot. 2003 Dec;54(2): 177-179.
doi: https://doi.org/10.18942/apg.KJ00004623224

Optical and anatomical characteristics of bracts from the Chinese “glasshouse” plant, Rheum alexandrae Batalin (Polygonaceae), in Yunnan, China

Tsukaya H. J Plant Res. 2002 Feb;115(1117):59-63. doi: 10.1007/s102650200009. PMID: 12884050

Brassinosteroids control the proliferation of leaf cells of Arabidopsis thaliana

Nakaya M, Tsukaya H, Murakami N, Kato M. Plant Cell Physiol. 2002 Feb;43(2):239-244. doi: 10.1093/pcp/pcf024. PMID: 11867704

The ANGUSTIFOLIA gene of Arabidopsis, a plant CtBP gene, regulates leaf-cell expansion, the arrangement of cortical microtubules in leaf cells and expression of a gene involved in cell-wall formation

Kim GT, Shoda K, Tsuge T, Cho KH, Uchimiya H, Yokoyama R, Nishitani K, Tsukaya H. EMBO J. 2002 Mar 15;21(6):1267-1279. doi: 10.1093/emboj/21.6.1267. PMID: 11889033; PMCID: PMC125914

The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper

Iwakawa H, Ueno Y, Semiarti E, Onouchi H, Kojima S, Tsukaya H, Hasebe M, Soma T, Ikezaki M, Machida C, Machida Y. Plant Cell Physiol. 2002 May;43(5):467-478. doi: 10.1093/pcp/pcf077. PMID: 12040093

Thermal insulation and accumulation of heat in the downy inflorescences of Saussurea medusa (Asteraceae) at high elevation in Yunnan, China

Tsukaya H, Fujikawa K, Wu SG. J Plant Res. 2002 Aug;115(4):263-268. doi: 10.1007/s10265-002-0030-1. Epub 2002 Jun 18. PMID: 12582728 <Issue Cover Image>

Leaf anatomy of a rheophyte, Dendranthema yoshinaganthum (Asteraceae), and of hybrids between D. yoshinaganthumand a closely related non-rheophyte, D. indicum

Tsukaya H. J Plant Res. 2002 Oct;115(5):329-333. doi: 10.1007/s10265-002-0041-y. Epub 2002 Jul 30. PMID: 12579357

Cell division and cell enlargement in isolated Cucurbita cotyledons grown in darkness and in light

Stoynova-Bakalova E, Petrov P, Tsukaya H. J Plant Res. 2002 Oct;115(5):375-380. doi: 10.1007/s10265-002-0048-4. Epub 2002 Sep 6. PMID: 12579362

Genetic control of petiole length in Arabidopsis thaliana

Tsukaya H, Kozuka T, Kim GT. Plant Cell Physiol. 2002 Oct;43(10):1221-1228. doi: 10.1093/pcp/pcf147. PMID: 12407202

Identification of factors that cause heterophylly in Ludwigia arcuata Walt. (Onagraceae)

Kuwabara A, Tsukaya H, Nagata T. Plant Biology 2001 Jan;3(1): 98-105 https://doi.org/10.1055/s-2001-11748

The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana regulates formation of a symmetric lamina, establishment of venation and repression of meristem-related homeobox genes in leaves

Semiarti E, Ueno Y, Tsukaya H, Iwakawa H, Machida C, Machida Y. Development 2001 May;128(10):1771-83. PMID: 11311158

Morphological adaptation of inflorescences in plants that bloom at low temperatures in early spring: the convergent evolution of “downy plants”

Tsukaya H, Tsuge, T. Plant Biology 2001 Sep;3(5): 536-543 <Issue Cover Image>

Heteroblasty in Arabidopsis thaliana (L.) Heynh.

Tsukaya H, Shoda K, Kim GT, Uchimiya H. Planta. 2000 Mar;210(4):536-542. doi: 10.1007/s004250050042. PMID: 10787046

Utricularia furcellata Oliver (Lentibulariaceae), a new record for Nepal

Tsukaya H. Newslet. Himalayan Bot. 2000 Aug; 27: 6-73

A taxonomic note on Habenaria albomarginata King & Pantl. (Orchidaceae)

Ohba H, Tsukaya H. J. Jap. Bot.2000 Oct;75(5): 311-313

Malaxis monophyllos (L.) Sw. (Orchidaceae), a new record from Nepal with description of a new variety

Tsukaya H, Ohba H. J. Jap. Bot. 2000 Oct;75(5): 314-316

A New Species of Schismatoglottis (Schismatoglottidinae, Araceae) from West Kalimantan and Observations of Its Peculiar Bulbil Development

Okada H, Tsukaya H, Mori Y. Systematic Botany 1999 Jan; 24(1): 62-68. doi:10.2307/2419386

Biological functions of proline in morphogenesis and osmotolerance revealed in antisense transgenic Arabidopsis thaliana

Nanjo T, Kobayashi M, Yoshiba Y, Sanada Y, Wada K, Tsukaya H, Kakubari Y, Yamaguchi-Shinozaki K, Shinozaki K. Plant J. 1999 Apr;18(2):185-193. doi: 10.1046/j.1365-313x.1999.00438.x. PMID: 103633703

Changes in the shapes of leaves and flowers upon overexpression of cytochrome P450 in Arabidopsis

Kim GT, Tsukaya H, Saito Y, Uchimiya H. Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):9433-9437. doi: 10.1073/pnas.96.16.9433. PMID: 10430960; PMCID: PMC17800

Cell cycling and cell enlargement in developing leaves of Arabidopsis

Donnelly PM, Bonetta D, Tsukaya H, Dengler RE, Dengler NG. Dev Biol. 1999 Nov 15;215(2):407-419. doi: 10.1006/dbio.1999.9443. PMID: 10545247

The ROTUNDIFOLIA₃ gene of Arabidopsis thaliana encodes a new member of the cytochrome P-450 family that is required for the regulated polar elongation of leaf cells

Kim GT, Tsukaya H, Uchimiya H. Genes Dev. 1998 Aug 1;12(15):2381-2391. doi: 10.1101/gad.12.15.2381. PMID: 9694802; PMCID: PMC317051 <Issue Cover Image>

The CURLY LEAF gene controls both division and elongation of cells during the expansion of the leaf blade in Arabidopsis thaliana

Kim GT, Tsukaya H, Uchimiya H. Planta. 1998 Oct;206(2):175-183. doi: 10.1007/s004250050389. PMID: 9736998

Flowering time of two saprophytic plants, Monotropa uniflora L. and Monotropastrum humile (D. Don) Hara in Japan

Tsukaya, H. J. Plant Res. 1998 Dec;111: 595-597

Morphological, physiological and molecular genetic characterization of Arabidopsis himalaica, with reference to A. Thaliana

Tsukaya H, Yokoyama J, Ikeda H, Kuroiwa H, Kuroiwa T, Iwatsuki K. J Plant Res. 1997 Mar;110(1):15-23. doi: 10.1007/BF02506838. PMID: 27520039

Determination of the unequal fate of cotyledons of a one-leaf plant, Monophyllaea

Tsukaya H. Development. 1997 Apr;124(7):1275-1280. PMID: 9118798

Genetic analyses of the formation of the serrated margin of leaf blades in Arabidopsis: combination of a mutational analysis of leaf morphogenesis with the characterization of a specific marker gene expressed in hydathodes and stipules

Tsukaya H, Uchimiya H. Mol Gen Genet.1997 Oct;256(3):231-238. doi: 10.1007/s004380050565. PMID: 9393447

Characterization and subcellular localization of a small GTP-binding protein (Ara-4) from Arabidopsis: conditional expression under control of the promoter of the gene for heat-shock protein HSP81-1

Ueda T, Anai T, Tsukaya H, Hirata A, Uchimiya H. Mol Gen Genet. 1996 Mar 20;250(5):533-539. doi: 10.1007/BF02174441. PMID: 8676856

Two independent and polarized processes of cell elongation regulate leaf blade expansion in Arabidopsis thaliana (L.) Heynh

Tsuge T, Tsukaya H, Uchimiya H. Development. 1996 May;122(5):1589-1600. PMID: 8625845

An Arabidopsis gene isolated by a novel method for detecting genetic interaction in yeast encodes the GDP dissociation inhibitor of Ara4 GTPase

Ueda T, Matsuda N, Anai T, Tsukaya H, Uchimiya H, Nakano A. Plant Cell. 1996 Nov;8(11):2079-2091. doi: 10.1105/tpc.8.11.2079. PMID: 8953772; PMCID: PMC161336

Phenotypic characterization and molecular mapping of acaulis2 mutant of Arabidopsis thaliana with flower stalks of much reduced length

Tsukaya H, Inaba-Higano K, Komeda Y. Plant Cell Phyisol. 1995 36: 239-246

Spiranthes sinensis var. amoena in Japan contains two seasonally differentiated groups

Tsukaya H. J. Plant Res. 1994 Jun; 107(2):187-190

The cotyledon: a superior system for studies of leaf development

Tsukaya H, Tsuge T, Uchimiya H. Planta 1994 Dec;195(2): 309-312

Floral organ-specific and constitutive expression of an Arabidopsis thaliana heat-shock HSP18.2::GUS fusion gene is retained even after homeotic conversion of flowers by mutation

Tsukaya H, Takahashi T, Naito S, Komeda Y. Mol Gen Genet. 1993 Feb;237(1-2):26-32. doi: 10.1007/BF00282780. PMID: 8096057

A new class of mutations in Arabidopsis thaliana, acaulis1, affecting the development of both inflorescences and leaves

Tsukaya H, Naito S, Rédei G.P, Komeda Y. Development 1993 July;118(3): 751-764. https://doi.org/10.1242/dev.118.3.751

Characterization of inflorescence-developmental mutants, acaulis, in Arabidopsis thaliana

Tsukaya H, Komeda Y, Physiological and molecular aspects of plant growth and differentiation : proceedings of a JSPS-NUS Seminar, Tsukuba, Japan, 23-25 August 1993. pp. 132-139

Analysis of intergenic spacer regions in the nuclear rDNA of Pharbitis nil

Katayama S, Hirano HY, Tsukaya H, Naito S, Komeda Y. Genome. 1992 Feb;35(1):92-97. doi: 10.1139/g92-016. PMID: 1572531

Transformation of protoplasmic droplets of Chara by ion injection

Tazawa M, Tsukaya H, Hayama T. J. Plant Physiol. 1991 July;138(3):317-321

Regulated expression of a gene-fusion product derived from the gene for phytochlome I from Pisum sativum and the uidA gene from E. coli in transgenic Petunia hybrida

Komeda Y, Yamashita H, Sato N, Tsukaya H, Naito S. Plant Cell Physiol. 1991 Sep; 32(6)737-743 https://doi.org/10.1093/oxfordjournals.pcp.a078139

Sugar-Dependent Expression of the CHS-A Gene for Chalcone Synthase from Petunia in Transgenic Arabidopsis

Tsukaya H, Ohshima T, Naito S, Chino M, Komeda Y. Plant Physiol. 1991 Dec;97(4):1414-1421. doi: 10.1104/pp.97.4.1414. PMID: 16668565; PMCID: PMC1081180

Materials for the distribution of vascular plants in Japan (129): Cymbidium nipponicum

Tsukaya H, Tuyama, T. J. Jap. Bot. 1990 Feb; 65(2): 12. (in Japanese)

Fibonacci spirals may not need the Golden Angle

Yin X, Tsukaya H. Quant Plant Biol. 2022 Jun 14;3:e13. doi: 10.1017/qpb.2022.10. PMID: 37077968; PMCID: PMC10095852.

The leaf meristem enigma: The relationship between the plate meristem and the marginal meristem

Tsukaya H. Plant Cell. 2021 Jul 21:koab190. doi: 10.1093/plcell/koab190. Epub ahead of print. PMID: 34289073.

分裂組織における細胞サイズの制御機構

江崎和音 ・ 塚谷裕一 Plant Morph. 2020 32: 45-51. doi: https://doi.org/10.5685/plmorphol.32.45

One-leaf plants in the Gesneriaceae: Natural mutants of the typical shoot system

Kinoshita A, Tsukaya H. Dev Growth Differ. 2019 Jan;61(1):25-33. doi: 10.1111/dgd.12582. Epub 2018 Dec 18. PMID: 30565219.

Re-examination of the role of endoreduplication on cell-size control in leaves

Tsukaya H. J Plant Res. 2019 Sep;132(5):571-580. doi: 10.1007/s10265-019-01125-7. Epub 2019 Jul 18. PMID: 31321606; PMCID: PMC6713683.

How leaves of mycoheterotrophic plants evolved – from the view point of a developmental biologist

Tsukaya H. New Phytol. 2018 Mar;217(4):1401-1406. doi: 10.1111/nph.14994. Epub 2018 Jan 14. PMID: 29332309.

Leaf shape diversity with an emphasis on leaf contour variation, developmental background, and adaptation

Tsukaya H. Semin Cell Dev Biol. 2018 Jul;79:48-57. doi: 10.1016/j.semcdb.2017.11.035. Epub 2017 Dec 7. PMID: 29199138.

Balanced cell proliferation and expansion is essential for flowering stem growth control

Ferjani A, Hanai K, Gunji S, Maeda S, Sawa S, Tsukaya H. Plant Signal Behav. 2015;10(4):e992755.
doi: 10.4161/15592324.2014.992755. PMID: 25831425; PMCID: PMC4622685.995..

Compensation: a key to clarifying the organ-level regulation of lateral organ size in plants

Hisanaga T, Kawade K, Tsukaya H. J Exp Bot. 2015 Feb;66(4):1055-63. doi: 10.1093/jxb/erv028. Epub 2015 Jan 29. PMID: 25635111.

Regulation of plant growth and development by the GROWTH-REGULATING FACTOR and GRF-INTERACTING FACTOR duo

Kim JH, Tsukaya H. J Exp Bot. 2015 Oct;66(20):6093-107. doi: 10.1093/jxb/erv349. Epub 2015 Jul 9. PMID: 26160584.

Behavior of Leaf Meristems and Their Modification

Ichihashi Y, Tsukaya H. Front Plant Sci. 2015 Dec 1;6:1060. doi: 10.3389/fpls.2015.01060. PMID: 26648955; PMCID: PMC4664833.

Yield increase: GRFs provide the key

Tsukaya H. Nat Plants. 2015 Dec 21;2:15210. doi: 10.1038/nplants.2015.210. PMID: 27250751.

Comparative leaf development in angiosperms

Tsukaya H. Curr Opin Plant Biol. 2014 Feb;17:103-9. doi: 10.1016/j.pbi.2013.11.012. Epub 2013 Dec 13. PMID: 24507501.

Roles of the vacuolar H+-PPase in seed storage oil mobilization and plant development

Ferjani A, Segami S, Horiguchi G, Muto Y, Maeshima M, Tsukaya H (2014)
Plant Morphol. 26: 45-51. https://doi.org/10.5685/plmorphol.26.45

Leaf blade and leaf petiole of Arabidopsis thaliana

Ichihashi Y, Kawade K., Tsukaya H. (2014) In: Noguchi T, Kawano S, Tsukaya H, Matsunaga S, Sakai A, Karahara I, Hayashi Y (eds.) Atlas of plant cell structure, Springer, ISBM 978-4-54940-6, Tokyo, Japan pp. 194-195,

Design for controllability

Tsukaya H. EMBO Rep. 2013 Jan;14(1):3. doi: 10.1038/embor.2012.202. Epub 2012 Dec 11. PMID: 23229586; PMCID: PMC3537154.

How do ‘housekeeping’ genes control organogenesis?–Unexpected new findings on the role of housekeeping genes in cell and organ differentiation

Tsukaya H, Byrne ME, Horiguchi G, Sugiyama M, Van Lijsebettens M, Lenhard M.
J Plant Res. 2013 Jan;126(1):3-15. doi: 10.1007/s10265-012-0518-2. Epub 2012 Aug 26. PMID: 22922868.

ROT4とそのホモログRTFL

吉村麻美・塚谷裕一(2013) 植物の生長調節 48: 60-66. https://doi.org/10.18978/jscrp.48.1_60　

Leaf development

Tsukaya H. Arabidopsis Book. 2013 Jun 7;11:e0163. doi: 10.1199/tab.0163. PMID: 23864837; PMCID: PMC3711357.

RTFL/DVL peptide family regulation of shoot development

Tsukaya H, Yoshimura A, Ikeuchi M, Yamaguchi T. (2014) “Peptide Signals in Plants”, Pearce G, Huffaker A. eds. Wiley-Blackwell Annual Plant Reviews

アスパラガス属植物に見られる新奇葉状器官の獲得とその形態の多様化

中山北斗・山口貴大・塚谷裕一 (2013) Plant Morph. 25: 89-94. 

Modification and co-option of leaf developmental programs for the acquisition of flat structures in monocots: unifacial leaves in Juncus and cladodes in Asparagus

Nakayama H, Yamaguchi T, Tsukaya H. Front Plant Sci. 2013 Jul 9;4:248. doi: 10.3389/fpls.2013.00248. PMID: 23847648; PMCID: PMC3705170.

Nomenclature Notes: Kalimantanorchis.

Tsukaya H. (2013) Orchids 82: 310-311.

Chapter 11, ROTUNDIFOLIA4.  In: “Handbook of Biologically Active Peptides (2nd edition)”

Yamaguchi T, Ikeuchi M, Tsukaya H. (2013) Y. Matsuzaki (ed.). Elsevier, San Diego, USA. pp. 53-57.

Class III compensation, represented by KRP2 overexpression, depends on V-ATPase activity in proliferative cells

Ferjani A, Ishikawa K, Asaoka M, Ishida M, Horiguchi G, Maeshima M, Tsukaya H. Plant Signal Behav. 2013 Nov;8(11):e27204. doi: 10.4161/psb.27204. Epub 2013 Dec 4. PMID: 24305734; PMCID: PMC4091196.　

Ribosomes and translation in plant developmental control

Horiguchi G, Van Lijsebettens M, Candela H, Micol JL, Tsukaya H.
Plant Sci. 2012 Aug;191-192:24-34. doi: 10.1016/j.plantsci.2012.04.008. Epub 2012 Apr 24. PMID: 22682562.

Leaf adaxial-abaxial polarity specification and lamina outgrowth: evolution and development

Yamaguchi T, Nukazuka A, Tsukaya H. Plant Cell Physiol. 2012 Jul;53(7):1180-94. doi: 10.1093/pcp/pcs074. Epub 2012 May 21. PMID: 22619472.

ようやく軌道に乗り始めた植物のエボデボ

塚谷裕一 (2012) 遺伝 67: 18-19.

葉の形態形成：その可塑性と器官レベル制御

塚谷 裕一 (2011) 細胞工学 30: 127-131.

植物のサイズ：その制御と生態的意味

塚谷 裕一 (2011) 細胞工学 30: 198-201.

The evolution and functional significance of leaf shape in the angiosperms

Nicotra AB, Leigh A, Boyce CK, Jones CS, Niklas KJ, Royer DL, Tsukaya H. Funct Plant Biol. 2011 Jul;38(7):535-552. doi: 10.1071/FP11057. PMID: 32480907.

Organ size regulation in plants: insights from compensation

Horiguchi G, Tsukaya H. Front Plant Sci. 2011 Jul 1;2:24. doi: 10.3389/fpls.2011.00024. PMID: 22639585; PMCID: PMC3355714.

Leaf development and evolution

Tsukaya H. J Plant Res. 2010 Jan;123(1):3-6. doi: 10.1007/s10265-009-0285-x. Epub 2009 Nov 28. PMID: 19946725.

Evolutionary and developmental studies of unifacial leaves in monocots: Juncus as a model system

Yamaguchi T, Tsukaya H. J Plant Res. 2010 Jan;123(1):35-41. doi: 10.1007/s10265-009-0255-3. Epub 2009 Aug 20. PMID: 19693435

Organ size control in Arabidopsis: Insights from compensation studies

Ferjani A, Horiguchi G, Tsukaya H. Plant Morph. 2010 April 22(1):65-71. doi: https://doi.org/10.5685/plmorphol.22.65 <Issue Cover Image>

葉の器官サイズを司る遺伝子ネットワーク　―　細胞数と細胞サイズを統合するメカニズム

塚谷裕一 (2010) 化学と生物48: 591-593. doi: https://doi.org/10.1271/kagakutoseibutsu.48.591

核内倍加による細胞肥大と植物のサイズ制御

塚谷裕一 (2009) 植物の生長調節 44: 135-141 doi: https://doi.org/10.18978/jscrp.44.2_135.

Controlling size in multicellular organs: focus on the leaf

Tsukaya H. PLoS Biol. 2008 Jul 15;6(7):e174. doi: 10.1371/journal.pbio.0060174. PMID: 18630989; PMCID: PMC2459211.

重力と光がからみあう葉の動きの制御

塚谷裕一(2008) 遺伝62: 67-68

植物の表現型可塑性とその進化

塚谷裕一 (2007)『植物の進化（細胞工学別冊）』116-123

植物の個体サイズの環境適応進化機構の解明—シロイヌナズナと矮小型オオバコを用いた解析

石川直子・塚谷裕一 (2007) 環境科学総合研究所年報(Annual report of interdisciplinary research institute of environmental sciences)

Evo-Devo of leaf shape control with a special emphasis on unifacial leaves in monocots

Yamaguchi T, Tsukaya H. Korean J. Pl. Taxon. 2007 Dec 37(4): 351-361

Mechanism of leaf-shape determination

Tsukaya H. Annu Rev Plant Biol. 2006;57:477-96. doi: 10.1146/annurev.arplant.57.032905.105320. PMID: 16669771

CHAPTER 8 – ROTUNDIFOLIA4: A Plant-Specific Small Peptide

Yamaguchi T, Tsukaya H. (2006) “Handbook of Biologically Active Peptides” Editor(s): Abba J. Kastin, Academic Press, pp 37-40

日本国内におけるネジバナ(Spiranthes sinensis var. australis)の分子多型と種内変異

塚谷裕一 (2005) Plant Morph. 17(1): 31-34.

Genetics, cell cycle and cell expansion in organogenesis in plants

Tsukaya H, Beemster GT. J Plant Res. 2006 Jan;119(1):1-4. doi: 10.1007/s10265-005-0254-y. PMID: 16365786 <Issue Cover Image>

葉の形態形成と植物ホルモン

山口貴大, 堀口吾朗, 塚谷裕一 (2006)　植物の生長調節　41(2):122-130.　Doi: https://doi.org/10.18978/jscrp.41.2_122

細胞増殖・細胞伸長と葉のサイズ制御

堀口吾朗 ・ 塚谷裕一 (2006) Plant Morph. 18(1): 61-68. doi: https://doi.org/10.5685/plmorphol.18.61

Leaf shape: genetic controls and environmental factors

Tsukaya H. Int J Dev Biol. 2005;49(5-6):547-555. doi: 10.1387/ijdb.041921ht. PMID: 16096964

シロイヌナズナの栽培法

堀口吾朗 ・ 塚谷裕一 (2005) 『モデル植物の実験プロトコール』学研メディカル秀潤社. pp. 35-39.

Photomorphogenesis of leaves: shade-avoidance and differentiation of sun and shade leaves　

Kim GT, Yano S, Kozuka T, Tsukaya H. Photochem Photobiol Sci. 2005 Sep;4(9):770-774. doi: 10.1039/b418440h. Epub 2005 May 4. PMID: 16121290.

葉の形態形成

塚谷裕一 ・ 堀口吾朗(2005)　蛋白質核酸酵素 50(6): 627-63

Beyond herbarium specimens – How should we deposit supplementary plant materials with classic herbarium specimens?

Tsukaya, H. (2005) “The Botanical Collections: Proceedings of the symposium ‘Siebold in the 21st Century’ held at the University Museum, the University of Tokyo, in 2003” (The University Museum Bulletin 41) Editors: Ohba, H, Boufford, D.E. pp. 141-154

FTAカードを用いたフィールドでの植物DNA採集法

塚谷裕一 ・ 池田博（2005）Bunrui 5(2):127-135. doi: https://doi.org/10.18942/bunrui.KJ00004651876

Organ shape and size: a lesson from studies of leaf morphogenesis

Tsukaya H. Curr Opin Plant Biol. 2003 Feb;6(1):57-62. doi: 10.1016/s1369526602000055. PMID: 12495752

セーター植物と温室植物：そのかたちとはたらき

塚谷裕一(2003) 遺伝 57(4):63-67

Formation of a symmetric flat leaf lamina in Arabidopsis

Machida C, Iwakawa H, Ueno Y, Semiarti E, Tsukaya H, Hasebe H, Kojima S, Machida Y (2003) “Morphogenesis and Pattern Formation in Biological Systems: Experiments and Models” Edited by Sekimura T, Noji S, Ueno N, Maini PK, Springer-Verlag Tokyo, Tokyo. Pp.177-187

A simple method for collecting DNA samples in the field

Tsukaya H. (2003) Newslet. Him. Bot. 32: 15-17

葉の形とサイズは環境に応じて変化する―葉形の可塑性と進化

塚谷裕一(2003)　遺伝 57(11):54-59

Interpretation of mutants in leaf morphology: genetic evidence for a compensatory system in leaf morphogenesis that provides a new link between cell and organismal theories

Tsukaya H. Int Rev Cytol. 2002;217:1-39. doi: 10.1016/s0074-7696(02)17011-2. PMID: 12019561.

Leaf development

Tsukaya H. Arabidopsis Book. 2002;1:e0072. doi: 10.1199/tab.0072. Epub 2002 Apr 4. PMID: 22303217; PMCID: PMC3243299.

The leaf index: heteroblasty, natural variation, and the genetic control of polar processes of leaf expansion

Tsukaya H. Plant Cell Physiol. 2002 Apr;43(4):372-378. doi: 10.1093/pcp/pcf051. PMID: 11978864
<Issue Cover Image>

Regulation of the biosynthesis of plant hormones by cytochrome P450s

Kim GT, Tsukaya H. J Plant Res. 2002 Jun;115(3):169-177. doi: 10.1007/s102650200022. PMID: 12579366

Morphological adaptation of bracts in Sino-Himalayan plants that bloom at low temperatures ―Downy plants and glasshouse plants―

Tsukaya H. (2002) Newslet. Him. Bot. 30: 1-7.

葉の形成 ― 葉の長さ、幅、大きさを決める遺伝子制御

塚谷裕一 (2002) 蛋白質核酸酵素 9月号増刊『植物の形づくり』（岡田清孝、町田泰則、島本功、福田裕穂、中村研三編）47 (12): 1576-1580.

横幅を決める形態形成遺伝子・ANとCtBP

塚谷裕一 (2002)　メディカル・サイエンス・ダイジェスト(MSD) 28巻10月号: 4-5.

Leaf Morphogenesis in Dicotyledons: Current Issues

Dengler NG, Tsukaya H. Int. J. Plant Sci.2001 May;162(3): 459-464. doi: https://doi.org/10.1086/320145

植物の発生メカニズム ― 後生動物の発生とどれだけ違うのか

塚谷裕一 (2001) 蛋白質核酸酵素 46 (10): 1332-1339

The role of meristematic activities in the formation of leaf blades

Tsukaya H. J Plant Res. 2000 June; 113(2): 119–126  doi: https://doi.org/10.1007/PL000139211)

遺伝子操作による葉・花形態の制御

塚谷裕一 (2000) ブレインテクノニュース79: 6-9　

Molecular mechanisms related to the evolution of leaf shape

Tsukaya H. (1999) “IIAS International Symposium on “Biodiversity”: 1998.12.3-12.5″ (IIAS Report 1999-003) Editor: Kunio Iwatsuki et al., International Institute for Advanced Studies, 2000, pp. 87-93.

Genetic evidence for polarities that regulate leaf morphogenesis

Tsukaya, H. J. Plant Res. 1998 March: 111 (1): 113–119 doi: https://doi.org/10.1007/BF02507157

葉の形の多様性とその遺伝子的背景

塚谷裕一 (1998) 数理科学 416:70-76.

葉の形作りのメカニズム

塚谷裕一(1998) Academia 175: 54-58.

形態進化の実験的モデル植物・シロイヌナズナ

塚谷裕一(1997) 遺伝 51: 28-32.

Developmental genetics of leaf morphogenesis in dicotyledonous plants

Tsukaya H. J. Plant Res. 1995 Dec. 108(4): 407–416 doi:https://doi.org/10.1007/BF02344229

Genetic analysis of cell-expansion processes in leaves of Arabidopsis thaliana

Tsukaya H, Tsuge T, Kim GT, Uchimiya H. Plant Morph. 1995, 7(1):11-17. doi: https://doi.org/10.5685/plmorphol.7.11

シュート形態形成の遺伝学的背景

塚谷裕一(1994) 蛋白質核酸酵素　臨時増刊号『エボリュ−ション』39(15): 2580-2590

双子葉植物の葉の形態形成 : モデル植物, アラビドプシスを用いた遺伝学的アプローチ

柘植知彦・塚谷裕一 Acta Phytotax. Geobot. 1994 April 45(2):151-164

植物のボディプラン

塚谷裕一 (1993) 科学 63(4): 255ー262

花序の形を決める遺伝子

塚谷裕一 (1993) SHINKA 3: 37-46

Control of Plant Organ Size and Shape

Xu, R., Li, S., Li, N., Tsukaya, H., Li, Y., eds. (2022). Lausanne: Frontiers Media SA. doi: 10.3389/978-2-83250-746-9 Sci. 2022 Oct 26;13:1067587, 230 p.

The Leaf: A Platform for Performing Photosynthesis. Advances in Photosynthesis and Respiration vol. 44

Adams WW. III, Terashima I. (eds.) Springer, The Netherlands, 2018, 575 p. 
(Tsukaya H. “Leaf shape evolution in the context of the primary function of the leaf as a photosynthetic organ” pp.1-26)

韓国語版『岩波生物学辞典』第５版

巌佐庸, 斉藤成也, 倉谷滋, 塚谷裕一 （原編・分担執筆）
Academy Publishing Co., Korea, 2017,

Flora of Japan Volume IVb Angiospermae Monocotyledonae(b)

Iwatsuki K, Boufford DE, Ohba H. (eds.) Kodansha, Tokyo, 2016, 335 p. 
(Tsukaya H.”Burmanniaceae” pp.194-197)

 『植物学の百科事典』

日本植物学会 編, 丸善出版, 2016, 802 p. 
(塚谷裕一「葉——多様にして定義の難しい器官」(pp.514-517) 「葉のつくられる仕組み pp. 584-585)

『改訂版　植物の科学』

塚谷裕一・荒木崇 編著, 放送大学教育振興会,  2015, 289 p. 

Atras of Plant Cell Structure

 Noguchi T, Kawano S, Tsukaya H, Matsunaga S, Sakai A, Karahara I, Hayashi Y (eds.) Springer, 2014, 202 p. 
(Tsukaya H. “Meristems” pp.187-202）

『岩波生物学辞典』第５版

巌佐庸, 斉藤成也, 倉谷滋, 塚谷裕一 編, 岩波書店, 2013, 2171p.（分担執筆）

『生物学入門』第２版

石川統, 大森正之, 嶋田正和 編, 東京化学同人, 2013, 296 p.
（塚谷裕一「5.9 植物の発生」「5.10 植物の体のつくりと働き」「5.11 植物の体つくりと植物ホルモン」「5.12 植物の生殖」pp.153-171）

『理系総合のための生命科学』第3版

東京大学生命科学教科書編集委員会 編, 羊土社, 2013, 342 p.（分担執筆）

『新しい植物分類学I』

日本植物分類学会 編, 講談社サイエンティフィク, 2012, 256 p.
(塚谷裕一「ヒナノシャクジョウ科」pp. 158-169） 

『進化学事典』

進化学会（斉藤成也, 巌佐庸, 遠藤一佳, 大島泰郎, 河田雅圭, 倉谷滋, 塚谷裕一, 長谷川眞理子, 疋田努, 深津武馬, 三中信宏, 矢原徹一 編）, 共立出版, 2012, 975 p. 

『植物ゲノム科学事典』

駒嶺穆 総編集, 朝倉書店, 2009, 406 p.（分担執筆） 

『植物の百科事典』

石井龍一, 岩槻邦男, 竹中明夫, 土橋豊, 長谷部光泰, 矢原徹一, 和田正三 編集
朝倉書店, 2009, 548 p.
（塚谷裕一「３ 植物のかたち」「6.4 文学・絵画に見る植物」） 

『研究をささえるモデル生物』

吉川寛・堀寛 編, 化学同人, 2009, 262 p.
（塚谷裕一・山口貴大 「8.5 シロイヌナズナとイグサの葉の形態形成を究める」pp. 159-161）

『植物の科学』

塚谷裕一・荒木崇 編著, 放送大学教育振興会, 2009, 270 p.
（第１章pp.10-27, 第６章pp.94-112, 第９章pp.140-155, 第15章pp. 242-258） 

Flora of Mustang

Eds. by Ohba H, Iokaya Y, Raj Sharma, L. Kodansha Scientific Ltd., Tokyo,  2008, 506 p.
( “Orchidaceae” pp. 471-482）

Plant Growth Signaling

Eds. by L. Bögre & G.T.S. Beemster (Plant Cell Monograph series, #10), Springer, 2008, 396 p.
(Ferjani A, Yano S, Horiguchi G, Tsukaya H “Control of leaf morphogenesis by long- and short-distance signaling: differentiation of leaves into sun or shade types and compensated cell enlargement” pp. 47-62） 

『プラントミメティックス』

甲斐昌一・森川弘道 編, エヌ・ティー・エス, 2006,
（柘植知彦・塚谷裕一　第１章第１節「植物のモジュールと配置——シュート」pp. 4-10） 

『変わる植物学　広がる植物学』―モデル植物の誕生

塚谷裕一, 東京大学出版会, 2006, 227 p. 

CtBP Family Proteins

G. Chinnadurai (ed.). G. Landes Bioscience, Texas, USA, 2006, 132 p.
(Tsukaya H. “A new member of the CtBP/BARS family from plants: Angustifolia. In: CtBP Family Proteins, Chapter 12” pp.112-118)

『生命環境科学I 生物多様性の成り立ち』

松本忠夫編, 放送大学教育振興会, 2005, 271 p.
(塚谷裕一 第5章「植物の発生と環境適応」pp.79-97，第10章「菌類における環境適応」pp. 157-174，第11章「菌類の形態形成メカニズム」pp. 175-192） 

『生物の形の多様性と進化』

関村利朗, 野地澄晴, 森田利仁 編, 裳華房, 2003, 352 p.
(塚谷裕一 第12章「葉の形、適応進化とその遺伝子的背景」pp. 127-136）

Himalayan Botany in the Twentieth and Twenty-first Centuries

Edited by Noshiro S, Rajbhandari K.R., The Society of Himalayan Botany Tokyo, 2002, Tokyo, 212 p.
(Tsukaya H. “Molecular mechanisms related to the evolution of leaf shape, with a special emphasis on leaf index” pp. 152-154） 

『植物工学の基礎』

長田敏行編 東京化学同人, 2002, 208 p.
(塚谷裕一 第5章「モデル植物としてのシロイヌナズナ」pp. 152-179, 第6章「イネゲノムプロジェクト」pp. 180-190）

『生物の小事典』

石浦章一, 小林秀明, 塚谷裕一, 岩波書店, 2001, 306 p.

『新版・モデル植物の実験プロトコール 新版　遺伝学的手法からゲノム解析まで』 

島本功・岡田清孝 編, 秀潤社, 2001, 251 p.
(塚谷裕一 「シロイヌナズナの接ぎ木法」pp.41-42,「光顕によるシロイヌナズナ組織・細胞の観察法」pp. 219-226） 

『植物生理学講座 ４　成長と分化』

福田裕穂 編, 朝倉書店, 2001, 202 p.
(塚谷裕一 「6.2 シュートの形成」pp. 134-144） 

『生物学入門』

石川統 編, 東京化学同人, 2001, 292 p.
(塚谷裕一 「植物の発生と分化」pp. 151-168 ） 

『植物の光センシング』

和田正三, 徳富哲, 長谷あきら, 長谷部光泰 監修, 学研メディカル秀潤社, 2001, 192 p.
(塚谷裕一・長谷あきら「シロイヌナズナにおける光応答の自然変異」pp. 85-86）

『新版・植物の形を決める分子機構』

岡田清孝, 町田泰則, 松岡信 監修, 学研メディカル秀潤社, 2000, 292 p.
(塚谷裕一「植物の形の多様化」pp.9-15, 塚谷裕一・町田千代子「器官の発生・分化・成熟、＜葉＞シロイヌナズナ」pp.103-116） 

『多様性の植物学 ３ 植物の種』

岩槻邦男・加藤雅啓 編, 東大出版会, 2000, 287 p.
(塚谷裕一 「遺伝子の変異と種分化」pp.25-52）

The flora of Hinku and Hunku Valleys, East Nepal

Ohba H, Ikeda H. eds., Tokyo: University Museum, University of Tokyo, Nature and Culture, No. 6, 2000, 272 p.
(Tsukaya H. “Orchidaceae” pp. 257-266） 

『花の自然誌』

大原雅 編著, 北海道大学図書刊行会, 1999, 278 p.
(塚谷裕一 「葉から花へ―花の進化と形態形成の遺伝子群」pp. 136-150） 

A Contribution to the Flora of Ganesh Himal, Central Nepal

Ohba H, Ikeda H. eds., The University Museum, Univ. Tokyo, Nature and Culture, No. 5, 1999, 84 p.
(Tsukaya H. & Ohba H. “Outline of climate in the monsoon season” pp. 3-7, Tsukaya, H. “Lentibulariaceae” p.61, “Orchidaceae” pp.73-81） 

『植物ホルモンと細胞の形』

今関英雅・柴岡弘郎 編, 学会出版センター, 1998, 190 p.
(塚谷裕一 「細胞の形と器官の形」pp. 177-184） 

『植物細胞工学シリーズ ６ 植物の細胞を観る実験プロトコール : 遺伝子発現から細胞内構造・機能まで』

福田裕穂 編著, 秀潤社, 1997, 220 p.
(塚谷裕一・今市涼子「走査型電子顕微鏡(SEM)による植物細胞の観察」
pp. 34-43） 

『モデル植物の実験プロトコール』

島本功・岡田清孝 編, 秀潤社, 1996, 260 p.
(塚谷裕一 「シロイヌナズナの接ぎ木法」pp.41-42, 「光顕によるシロイヌナズナ組織・細胞の観察法」pp. 219-226） 

Biodiversity and Evolution 

Arai R, Kato M, Doi Y. eds., The National Science Museum Foundation, Tokyo, 1995, 336 p.
(Tsukaya H. “The genetic control of morphogenesis in Arabidopsis and its relevance to the development of biodiversity.” pp. 253-265） 

『植物の＜見かけ＞はどう決まる』

塚谷裕一, 中央公論社, 1995, 204 p. 中公新書

『ラボマニュアル 植物遺伝子の機能解析』

岩淵雅樹・志村令郎 編, 丸善, 1992, 169 p.
(塚谷裕一, 内藤哲, 米田好文 「トランスジェニック・シロイヌナズナ」 
pp. 141-160） 

『Flora : 図鑑植物の世界』

スミソニアン協会, キュー王立植物園 監修 / 塚谷 裕一 日本語版監修
東京書籍, 2019, 439 p.

『多様な花が生まれる瞬間』

奥山雄大 著
斉藤成也, 塚谷裕一, 高橋淑子 監修　シリーズ・遺伝子から探る生物進化⑥
慶応大学出版会, 2018, 177 p.

『植物はなぜ自家受精をするのか』

土松隆志 著
斉藤成也, 塚谷裕一, 高橋淑子 監修　シリーズ・遺伝子から探る生物進化②
慶応大学出版会, 2017, 151 p. 

『胎児期に刻まれた進化の痕跡』

入江直樹 著
斉藤成也, 塚谷裕一, 高橋淑子 監修　シリーズ・遺伝子から探る生物進化②
慶応大学出版会, 2016, 131 p. 

『クジラの鼻から進化を覗く』

岸田拓士 著
斉藤成也, 塚谷裕一, 高橋淑子 監修　シリーズ・遺伝子から探る生物進化①
慶応大学出版会, 2016, 123 p. 

『植物の世代交代制御因子の発見』

榊原恵子 著
斉藤成也, 塚谷裕一, 高橋淑子 監修　シリーズ・遺伝子から探る生物進化③
慶応大学出版会, 2016, 170 p.

『新たな魚類大系統 ―― 遺伝子で解き明かす魚類3万種の由来と現在』

宮正樹 著
斉藤成也, 塚谷裕一, 高橋淑子 監修　シリーズ・遺伝子から探る生物進化④
慶応大学出版会, 2016, 236 p.

『テイツ／ザイガー植物生理学／発生学 原著第6版』

L.テイツ, E.ザイガー, I.M.モーラー, A.マーフィー 編 /西谷和彦・島崎研一郎 監訳, 講談社, 2017, 832 p.
(塚谷裕一 第19章「栄養成長と器官形成」pp.553-590）

『ウォルパート発生生物学』

武田洋幸・田村宏治 監訳, メディカル・サイエンス・インターナショナル, 2012, 672 p.
(塚谷裕一 第7章「植物の発生」pp. 269-304) 

『植物を考える : ハーバード教授とシロイヌナズナの365日』

ニコラス・ハーバード 著 / 塚谷裕一・南澤直子 訳, 八坂書房, 2009, 395 p.