Original papers
![]() |
||
![]() |
![]() |
||
![]() |
Toyokura, K., Goh, T., Shinohara, H., Shinoda, A., Kondo, Y., Okamoto, Y., Uehara, T., Fujimoto, K., Okushima, Y., Ikeyama, Y., Nakajima, K., Mimura, T., Tasaka, M., Matsubayashi, Y. and Fukaki, H.
Lateral inhibition by a peptide hormone-receptor cascade during Arabidopsis lateral root founder cell formation.
Developmental Cell, 48: 64-75 doi: 10.1016/j.devcel.2018.11.031.
プレスリリース「根が適切な間隔で分岐する仕組みに働く植物ペプチドを発見」
Miyashima, S., Roszak, P., Sevilem, I., Toyokura, K., Blob, B., Heo, J., Mellor, N., Help-Rinta-Rahko, H., Otero, S., Smet, W., Boekschoten, M., Hooiveld, G., Hashimoto, K., Smetana, O., Siligato, R., Wallner, E., Mahonen, A.P., Kondo, Y., Melnyk, C.W., Greb, T., Nakajima, K., Sozzani, R., Bishopp, A., De Rybel, B. and Helariutta, Y.
Mobile PEAR transcription factors integrate positional cues to prime cambial growth.
Nature, doi:10.1038/s41586-018-0839-y.
Original papers
![]() |
||
![]() |
Takahashi, F., Suzuki, T., Osakabe, Y., Betsuyaku, S., Kondo, Y., Dohmae, N., Fukuda, H., Yamaguchi-Shinozaki, K., Shinozaki, K.
A small peptide modulates stomatal control via abscisic acid in long-distance signalling.
Nature 556, 235–238.
プレスリリース「乾燥に強くなる植物ペプチドを発見-植物の乾燥ストレス応答を紐解く新展開-」
![]() |
||
Yamazaki, K., Kondo, Y., Kojima, M., Takebayashi, Y., Sakakibara, H. and Fukuda, H. |
||
![]() |
![]() |
||
![]() |
Nurani, A.M., Kondo, Y. and Fukuda, H.
Ectopic vascular induction in Arabidopsis cotyledons for sequential analysis of phloem differentiation.
Methods Mol Biol. 1830,149-159.
Original papers
![]() |
||
Kondo, Y., Suguchi, A. and Fukuda, H. |
||
![]() |
![]() |
||
![]() |
||
![]() |
![]() |
||
![]() |
Doi, H., Tokura, Y., Mori, Y., Mori, K., Asakura, Y., Usuda, Y., Fukuda, H. and Chinen, A.
Identification of enzymes responsible for extracellular alginate depolymerization and alginate metabolism in Vibrio algivorus.
Appl. Microbiol. Biotech. 101, 1581-1592.
Reviews & others
![]() |
||
![]() |
Saito, M., Nurani, A.M., Kondo, Y. and Fukuda, H. Tissue culture for xylem differentiation with Arabidopsis leaves. Methods Mol Biol. 1544, 59-65. doi: 10.1007/978-1-4939-6722-3_5. |
|
![]() |
Original papers
Morita, J., Kato, K., Nakane, T., Kondo, Y., Fukuda, H., Nishimasu, H., Ishitani, R. and Nureki, O.
Crystal structure of the plant receptor-like kinase TDR in complex with the TDIF peptide.
Nature Communications, doi: 10.1038/ncomms12383
- プレスリリース『植物のホルモンTDIFとその受容体TDRの複合体の「かたち」を解明』
![]() |
||
![]() |
Highlighted Author Profile: Yuki Kondo プレスリリース 新学術領域「植物細胞壁の情報処理システム」HP内 新聞記事
|
|
![]() |
Tazoe, Y., Sazuka, T., Yamaguchi, M., Saito, C., Ikeuchi, M., Kanno, K., Kojima, S., Hirano, K., Kitano, H., Kasuga, S., Endo, T., Fukuda, H.and Makino, A.
Growth Properties and Biomass Production in the Hybrid C4 Crop Sorghum bicolor.
Plant Cell Physiol. 57, 944-952.
Reviews & others
![]() |
|
![]() |
|
![]() |
Fukuda, H.
Signaling, transcriptional regulation, and asynchronous pattern formation governing plant xylem development.
Proc. Jpn. Acad., Ser. B 92; 98-107.
![]() |
||
![]() |
Tazoe, Y., Sazuka, T., Yamaguchi, M., Saito, C., Ikeuchi, M., Kanno, K., Kojima, S., Hirano, K., Kitano, H., Kasuga, S., Endo, T., Fukuda, H. and Makino, A.
Growth properties and biomass production in the hybrid C4 crop Sorghum bicolor.
Plant Cell Physiol. doi: 10.1093/pcp/pcv158
![]() |
||
![]() |
Reviews & others
Original papers
![]() |
Araya, T., Miyamoto, M., Wibowo, J., Suzuki, A., Kojima, S., Tsuchiya, Y.N., Sawa, Y., Fukuda, H., von Wirén, N. and Takahashi, H.
CLE-CLAVATA1 peptide-receptor signaling module regulates the expansion of plant root systems in a nitrogen-dependent manner.
Proc. Natl. Acad. Sci. USA 111, 2029-2034.
Reviews & others
Ohashi-Ito, K. and Fukuda, H.
Xylem
Curr. Biol. 24, R1149.
Kondo, Y*., Hirakawa, Y.* and Fukuda, H. (*co-first authors)
Peptide ligands in plants.
in
"Signaling Pathways in Plants" edited by Machida, Y., Lin, C. and Tamanoi, F.
The Enzymes 35, 85-112. Academic Press
"Plant Cell Wall Patterning and Cell Shape" edited by Fukuda, H.
WILEY Blackwell
Oda, Y. and Fukuda, H.
Xylem Cell Wall Pattern Formation Regulated by Microtubule-associated Proteins and ROP GTPases. pp191-214.
Endo, S., Betsuyaku, S. and Fukuda, H.
Endogenous peptide ligand–receptor systems for diverse signaling networks in plants.
Curr. Opin. Plant Biol. 21, 140-146.
![]() |
Original papers
![]() |
Tamaki, .T, Betsuyaku, S., Fujiwara, M., Fukao, Y., Fukuda, H. and Sawa, S.
Suppressor of llp1 1-mediated c-terminal processing is critical for CLE19 peptide activity.
Plant J. 6, 970-981.
Jewaria, P.K., Hara, T., Tanaka, H., Kondo, T., Betsuyaku, S., Sawa, S., Sakagami, Y., Aimoto, S. and Kakimoto, T.
Differential effects of the peptides stomagen, EPF1 and EPF2 on activation of MAP kinase MPK6 and the SPCH protein level.
Plant Cell Physiol. 54, 1253-1262.
Endo, S., Shinohara, H., Matsubayashi, Y. and Fukuda, H.
A novel pollen-pistil interaction conferring high-temperature tolerance during reproduction via CLE45 signaling.
Curr. Biol. 23, 1-7.
プレスリリース「暑さに負けない「植物の受精」の仕組みを解明」
Link to Research (日本語/English)
Hisanaga, T., Ferjani, A., Horiguchi, G., Ishikawa, N., Fujikura, U., Kubo, M., Demura, T., Fukuda, H., Ishida, T., Sugimoto, K. and Tsukaya, H.
The ATM-dependent DNA damage response acts as an upstream trigger for compensation in the fas1 mutation during Arabidopsis leaf development.
Plant Physiol. 162, 831-41.
Ohashi-Ito, K., Oguchi, M., Kojima, M., Sakakibara, H. and Fukuda, H.
Auxin-associated initiation of vascular cell differentiation by LONESOME HIGHWAY.
Development 140, 765-769.
Ohashi-Ito, K., Matsukawa, M. and Fukuda, H.
An atypical bHLH transcription factor regulates early xylem development downstream of auxin.
Plant Cell Physiol. 54, 398-405.
Ohashi-Ito, K. and Fukuda, H.
Initiation of vascular development.
Physiol. Plant. 151, 142-146.
Oda, Y. and Fukuda, H.
Spatial organization of xylem cell walls by ROP GTPases and microtubule-associated proteins.
Curr. Opin. Plant Biol. 16, 743-748.
Oda, Y. and Fukuda, H.
The dynamic interplay of plasma membrane domains and cortical microtubules in secondary cell wall patterning.
Front. Plant Sci. 4, 511.
小田祥久、福田裕穂
二次細胞壁パターンの制御機構
化学と生物 51, 795-801.
小田祥久、福田裕穂
二次細胞壁のパターン形成を支配する分子機構
Cellulose Communications 20, 125-129.
Lucas, J. et al.
The plant vascular system: evolution, development and functions.
Journal of Integrative Plant Biology 55, 294–388.
小田祥久, 福田裕穂
二次細胞壁パターン形成のイメージング解析
Plant Morphology 25, 45-50. (和文総説)
小田祥久
植物を支える細胞壁「形を生み出す相互作用」
生命誌ジャーナル76号
Kondo, Y., Hirakawa, Y. and Fukuda, H.
TDIF
Handbook of Biologically Active Peptides, 2nd Edition; 71-75.
Original papers
Han, JJ., Lin, W., Oda, Y., Cui, KM., Fukuda, H. and He, XQ.
The proteasome is responsible for caspase-3-like activity during xylem development.
Plant J. 72, 129-141.
Oda, Y. and Fukuda, H.
Initiation of cell wall pattern by a Rho- and microtubule-driven symmetry breaking.
Science 337, 1333-1336.
プレスリリース「植物細胞の "形を決める" 遺伝子を発見~350年来の謎を解明」
ライフサイエンス新着論文レビュー (日本語解説)
Reviews & others
Oda, Y. and Fukuda, H.
Secondary cell wall patterning during xylem differentiation.
Curr. Opin. Plant Biol. 15, 38–44.
Kobayashi, Y., Motose, H., Iwamoto, K. and Fukuda, H.
Expression and genome-wide analysis of the xylogen-type gene family.
Plant Cell Physiol. 52, 1095-1106.
Furuta, K., Kubo, M., Sano, K., Demura, T., Fukuda, H., Liu, Y.G., Shibata, D. and Kakimoto, T.
The CKH2/PKL chromatin remodeling factor negatively regulates cytokinin responses in Arabidopsis calli.
Plant Cell Physiol. 52, 618-628.
Reviews & others
Betsuyaku, S. Sawa, S. and Yamada, M.
The function of the CLE peptides in plant development and plant-microbe interactions
The Arabidopsis Book 9, e0149.
Original papers
Reviews & others
Original papers
Kuroha, T., Tokunaga, H., Kojima, M., Ueda, N., Ishida, T., Nagawa, S., Fukuda, H., Sugimoto, K. and Sakakibara, H.
Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis.
Plant Cell 21, 3152-3169.
Miyazaki, S., Murata, T., Sakurai-Ozato, N., Kubo, M., Demura, T., Fukuda, H. and Hasebe M.
ANXUR1 and 2, sister genes to FERONIA/SIRENE, are male factors for coordinated fertilization.
Curr. Biol. 19, 1327-1331.
Yoshida, S., Iwamoto, K., Demura, T. and Fukuda, H.
Comprehensive analysis of the regulatory roles of auxin in early transdifferentiation into xylem cells.
Plant Mol. Biol. 70, 457-469.
Naramoto, S., Sawa, S., Koizumi, K., Uemura, T., Ueda, T., Friml, J., Nakano, A. and Fukuda, H.
Phosphoinositide-dependent regulation of VAN3 ARF-GAP localization and activity essential for vascular tissue continuity in plants.
Development 136, 1529-1538.
Miwa, H., Tamaki, T., Fukuda, H. and Sawa, S.
Evolution of CLE signaling: origins of the CLV1 and SOL2/CRN receptor diversity.
Plant Signal Behav. 4, 477-481.
Motose, H., Iwamoto, K., Endo, S., Demura, T., Sakagami, Y., Matsubayashi, Y., Moore, K.,L. and Fukuda, H.
Involvement of phytosulfokine in the attenuation of stress response during the transdifferentiation of zinnia mesophyll cells into tracheary elements.
Plant Physiol. 150, 437-447.
Endo, S., Pesquet, E., Yamaguchi, M., Tashiro, G., Sato, M., Toyooka, K., Nishikubo, N., Udagawa-Motose, M., Kubo, M., Fukuda, H. and Demura, T.
Identifying new components participating in the secondary cell wall formation of vessel elements in Zinnia and Arabidopsis.
Plant Cell 21, 1155-1165.
Kato, K., Gális, I., Suzuki, S., Araki, S., Demura, T., Criqui, M.C., Potuschak, T., Genschik, P., Fukuda, H., Matsuoka, K. and Ito, M.
Preferential up-regulation of G2/M phase-specific genes by overexpression of the hyperactive form of NtmybA2 lacking its negative regulation domain in tobacco BY-2 cells.
Plant Physiol. 149, 1945-1957.
Reviews & others
Miwa, H., Kinoshita, A., Fukuda, H. and Sawa, S.
Plant meristems: CLAVATA3/ESR-related signaling in the shoot apical meristem and the root apical meristem.
J. Plant Res. 122, 31-39.
Original papers
Sakaguchi J. and Fukuda H.
Cell differentiation in the longitudinal veins and formation of commissural veins in rice (Oryza sativa) and maize (Zea mays).
J. Plant Res. 121, 593-602.
Miwa, H., Betsuyaku, S., Iwamoto, K., Kinoshita, A., Fukuda, H. and Sawa S.
The receptor-like kinase SOL2 mediates CLE signaling in Arabidopsis.
Plant Cell Physiol. 49, 1752-1757.
Hirakawa Y., Shinohara H., Kondo Y., Inoue A., Nakanomyo I., Ogawa M., Sawa S., Ohashi-Ito K., Matsubayashi Y. and Fukuda H.
Non-cell-autonomous control of vascular stem cell fate by a CLE peptide/receptor system.
Proc. Natl. Acad. Sci. USA 105, 15208-15213.
Yamaguchi M, Kubo M, Fukuda H, Demura T.
Vascular-related NAC-DOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots.
Plant J. 55, 652-664.
Endo, S., Pesquet, E., Tashiro, G., Kuriyama, H., Goffner, D., Fukuda, H. and Demura, T.
Transient transformation and RNA silencing in Zinnia tracheary element differentiating cell cultures.
Plant J. 53, 864-875.
Original papers
Kinoshita, A., Nakamura, Y., Sasaki, E., Kyozuka, J., Fukuda, H. and Sawa, S.
Gain-of-function phenotypes of chemically synthetic CLAVATA3/ESR-Related (CLE) Peptides in Arabidopsis thaliana and Oryza sativa.
Plant Cell Physiol. 48, 1821-1825.
Pyo, H., Demura, T. and Fukuda, H.
TERE; a novel cis-element responsible for a coordinated expression of genes related to programmed cell death and secondary wall formation during differentiation of tracheary elements.
Plant J. 51, 955-965.
Yamamoto, R., Fujioka, S., Iwamoto, K., Demura, T., Takatsuto, S., Yoshida, S. and Fukuda, H.
Co-regulation of brassinosteroid biosynthesis-related genes during xylem cell differentiation.
Plant Cell Physiol. 48, 74-83.
Reviews & others
Fukuda, H., Hirakawa, Y. and Sawa, S.
Peptide signaling in vascular development.
Curr Opin Plant Biol. 10, 477-482.
Demura, T. and Fukuda, H.
Transcriptional regulation in wood formation.
Trends Plant Sci. 12, 64-70.
Original papers
Nagawa, S., Sawa, S., Sato, S., Kato, T., Tabata,S. and Fukuda, H.
Gene trapping in Arabidopsis reveals genes involved in vascular development.
Plant Cell Physiol. 47, 1394-1405.
Kondo, T., Sawa, S., Kinoshita, A., Mizuno, S., Kakimoto, T., Fukuda, H. and Sakagami Y.
A plant peptide encoded by CLV3 identified by in situ MALDI-TOF MS analysis.
Science 313, 845-848.
Ito, Y., Nakanomyo, I., Motose, H., Iwamoto, K., Sawa, S., Dohmae, N. and Fukuda, H.
Dodeca-CLE peptides as suppressors of plant stem cell differentiation.
Science, 313, 842-845.
Muto, H., Nagao, I., Demura, T., Fukuda, H., Kinjo, M. and Yamamoto, K.T.
Fluorescence cross-correlation analyses of the molecular interaction between an Aux/IAA protein, MSG2/IAA19, and protein-protein interaction domains of auxin response factors of arabidopsis expressed in HeLa cells.
Plant Cell Physiol. 47, 1095-1101.
Shinohara, N., Sugiyama, M. and Fukuda, H.
Higher extracellular pH suppresses tracheary element differentiation by affecting auxin uptake.
Planta 224, 394-404
Gális I, Simek P, Narisawa T, Sasaki M, Horiguchi T, Fukuda H, Matsuoka K.
A novel R2R3 MYB transcription factor NtMYBJS1 is a methyl jasmonate-dependent regulator of phenylpropanoid-conjugate biosynthesis in tobacco.
Plant J. 46, 573-592.
Sekimoto, H., Tanabe, Y., Tsuchikane, Y., Shirosaki, H., Fukuda, H., Demura, T. and, Ito, M.
Gene expression profiling using cDNA microarray analysis of the sexual reproduction stage of the unicellular charophycean alga Closterium peracerosum-strigosum-littorale complex.
Plant Physiol. 141, 271-279.
Toyooka, K., Moriyasu, Y., Goto, Y., Takeuchi, M., Fukuda, H. and Matsuoka, K.
Protein aggregates are transported to vacuoles by a macroautophagic mechanism in nutrient-starved plant cells.
Autophagy 2, 96-106.
Sato, Y., Demura, T., Yamawaki, K., Inoue, Y., Sato, S., Sugiyama, M. and Fukuda, H.
Isolation and characterization of a novel peroxidase gene ZPO-C whose expression and function are closely associated with lignification during tracheary element differentiation.
Plant Cell Physiol. 47, 493-503.
Sawa, S., Kinoshita, A., Nakanomyo, I. and Fukuda, H.
CLV3/ESR-related (CLE) peptides as intercellular signaling molecules in plants.
Chem Rec. 6, 303-310.
Pyo,H., Demura, T. and Fukuda, H.
Vascular cell expression patterns of Arabidopsis bZIP group I genes.
Plant Biotech. 23, 497-501.
Original papers
Yoshida, S., Kuriyama, H. and Fukuda, H.
Inhibition of transdifferentiation into tracheary elements by polar auxin transport inhibitors through the intracellular auxin depletion.
Plant Cell Physiol. 46, 2019-2028.
Henmi, K., Demura, T., Tsuboi, S., Fukuda, H., Iwabuchi, M. and Ogawa, K.
Change in the redox state of glutathione regulates differentiation of tracheary elements in Zinnia cells and Arabidopsis roots.
Plant Cell Physiol. 46, 1757-1765.
Ohashi-Ito, K., Kubo, M., Demura, T. and Fukuda, H.
Class III homeodomain leucine-zipper proteins regulate xylem cell differentiation.
Plant Cell Physiol. 46,1646-1656.
Shimizu, M., Igasaki, T., Yamada, M., Yuasa, K., Hasegawa, J., Kato, T., Tsukagoshi, H., Nakamura, K., Fukuda, H. and, Matsuoka K.
Experimental determination of proline hydroxylation and hydroxyproline arabinogalactosylation motifs in secretory proteins.
Plant J. 42, 877-889.
Kubo, M., Udagawa, M., Nishikubo, N., Horiguchi, G., Yamaguchi, M., Ito, J., Mimura, T., Fukuda, H. and Demura, T.
Transcription switches for protoxylem and metaylem vessel formation.
Genes Dev. 19, 1855-1860.
Yamauchi, D., Sutoh, K., Kanegae, H., Horiguchi, T., Matsuoka, K., Fukuda, H. and Wada M.
Analysis of expressed sequence tags in prothallia of Adiantum capillus-veneris.
J. Plant Res. 118, 223-227.
Shimizu, M., Igasaki, T., Yamada, M., Yuasa, K., Hasegawa, J., Kato, T., Tsukagoshi, H., Nakamura, K., Fukuda, H. and Matsuoka, K.
Experimental determination of proline hydroxylation and hydroxyproline arabinogalactosylation motifs in secretory proteins.
Plant J. 42, 877-889.
Sawa,S., Koizumi, K.,Naramoto, S.,Demura, T., Ueda, T., Nakano, A. and Fukuda, H.
DRP1A is responsible for vascular continuity synergistically working with VAN3 in Arabidopsis.
Plant Physiol. 138, 819-826.
Suzuki, T., Nakajima, S., Inagaki, S., Hirano-Nakakita, M., Matsuoka, K., Demura, T., Fukuda, H., Morikami, A. and Nakamura K.
TONSOKU is expressed in S phase of the cell cycle and its defect delays cell cycle progression in Arabidopsis.
Plant Cell Physiol. 46, 736-742.
Koizumi, K., Naramoto, S., Sawa, S., Yahara, N., Ueda, T., Nakano, A., Sugiyama, M. and Fukuda, H.
VAN3 ARF-GAP-mediated vesicle transport is involved in leaf vascular network formation.
Development 132, 1699-1711.
Tokunaga, N., Sakakibara, N., Umezawa, T., Ito, Y., Fukuda, H. and Sato, Y.
Involvement of extracellular dilignols in lignification during tracheary element differentiation of isolated Zinnia mesophyll cells.
Plant Cell Phisiol. 46, 224-232.
Yuasa, K., Toyooka, K., Fukuda, H. and Matsuoka, K.
Membrane-anchored prolyl hydroxylase with an export signal from the endoplasmic reticulum.
Plant J. 41, 81-94.
Sawa, S., Demura, T., Horiguchi, G., Kubo, M. and Fukuda, H.
The ATE genes are responsible for repression of transdifferentiation into xylem cells in Arabidopsis.
Plant Physiol. 137, 141-148.
Original papers
Pyo, H., Demura, T. and Fukuda, H.
Spatial and temporal tracing of vessel differentiation in young Arabidopsis seedlings by the expression of an immature trachyary element-specific promoter.
Plant Cell Physiol. 45, 1529-1536.
Matsuoka, K., Demura, T., Galis, I., Horiguchi, T., Sasaki, M., Tashiro, G. and Fukuda, H.
A comprehensive gene expression analysis toward the understanding of growth and differentiation of tobacco BY-2 cells.
Plant Cell Physiol. 45, 1280-1289.
Motose, H., Sugiyama, M. and Fukuda ,H.
A proteoglycan mediates inductive interaction during plant vascular development.
Nature 429, 873-878.
Sato-Nara, K., Demura, T. and Fukuda, H.
Expression of photosynthesis-related genes and their regulation by light during somatic embryogenesis in Daucus carota.
Planta 219, 23-31.
Nakashima, J., Endo, S. and Fukuda, H.
Immunocytochemical localization of polygalacturonase during tracheary element differentiation in Zinnia elegans.
Planta 218, 729-739.
Ito, Y., Tokunaga, N., Sato, Y., Fukuda, H.
Transfer of phenylpropanoids via the medium between xylem cells in Zinnia xylogenic culture.
Plant Biotechnology 21, 205-213.
Reviews & others
Fukuda, H. Signals that control plant vascular cell differentiation.
Nature reviews molecular cell biology, 5, 379-391.
Original papers
Ohashi-Ito, K. and Fukuda, H.
HD-Zip III homeobox genes that Include a novel member, ZeHB-13 (Zinnia) / ATHB-15 (Arabidopsis), are involved in procambium and xylem cell differentiation.
Plant Cell Physiol. 44, 1350-1358.
Reviews & others
Obara, K. and Fukuda, H. Programmed cell death in xylem differentiation.
In "Programmed cell death in plants (J. Gray eds.)" p. 131-154, Sheffield Academic Press, Sheffield.
Obara, K.
Plant vessel elements trans-differentiated from mesophyll cells in vitro.
Nat. Cell Biol. 5, 15. (Image competition "Cell of the Month")
Obara, K.
Plant (Zinnia elegans) vessel elements transdifferentiated from mesophyll cells in vitro.
Nat. Rev. Mol. Cell Biol. 4, 10-11. (Image competition "Cell of the Month")
Original papers
Ito, J. and Fukuda, H.
ZEN1 is a key enzyme in the degradation of nuclear DNA during programmed cell death of tracheary elements.
Plant Cell 14, 3201-3211.
Nakanomyo, I., Kost, B., Chua, N-H. and Fukuda, H.
Preferential and asymmetrical accumulation of a Rac small GTPase mRNA in differentiating xylem cells of Zinnia elegans.
Plant Cell Physiol. 43, 1484-1492.
Demura, T., Tashiro, G., Horiguchi, G., Kishimoto, N., Kubo, M., Matsuoka, N., Minami, A., Nagata-Hiwatashi, M., Nakamura, K., Okamura, Y., Sassa, N., Suzuki, S., Yazaki, J., Kikuchi, S. and Fukuda, H.
Visualization by comprehensive microarray analysis of gene expression programs during transdifferentiation of mesophyll cells into xylem cells.
Proc. Natl. Acad. Sci. USA 99, 15794-15799.
Ohashi-Ito, K., Demura, T. and Fukuda, H.
Promotion of transcript accumulation of novel Zinnia immature xylem-specific HD-Zip III homeobox genes by brassinosteroids.
Plant Cell Physiol. 43, 1146-1153.
Obara, K., Sumi, K. and Fukuda, H. The use of multiple transcription starts causes the dual targeting of Arabidopsis putative monodehydroascorbate reductase to both mitochondria and chloroplasts. Plant Cell Physiol. 43, 697-705.
Shinohara, N. and Fukuda, H.
Isolation of monoclonal antibodies recognizing rare and dominant epitopes in plant vascular cell walls by phage display subtraction.
J. Immunol. Methods 264, 187-194.
Ohdaira, Y., Kakegawa K., Amino, S., Sugiyama, M. and Fukuda, H.
Activity of cell-wall autolysis associated with differentiation of isolated mesophyll cells of Zinnia elegans into tracheary elements.
Planta 215, 177-184.
Endo, M., Matsubara. H., Kokubun, T., Masuko, H., Takahata, Y., Tsuchiya, T., Fukuda, H., Demura, T. and Watanabe, M.
The advantages of cDNA microarray as an effective tool for identification of reproductive organ-specific genes in a model legume, Lotus japonicus.
FEBS Lett. 514, 229-237.
Nishitani, C., Demura, T. and Fukuda, H.
Analysis of the early stages of wound vascular differentiation processes using two molecular marker genes, TED3 and ZeHB3.
Plant Cell Physiol. 43, 79-90.
Reviews & others
Kuriyama, H. and Fukuda, H.
Developmental programmed cell death in plants.
Curr. Opin. Plant Biol. 5, 568-573.
Original papers
Endo, S., Demura, T. and Fukuda, H.
Inhibition of proteasome activity by the TED4 protein in extracellular space: a novel mechanism for protection of living cells from injury caused by dying cells.
Plant Cell Physiol. 42, 9-19.
Henmi K., Tsuboi, S., Demura, T., Fukuda, H., Iwabuchi, M. and Ogawa, K.
Glutathione and glutathione disulfide regulate tracheary element differentiation in cultured mesophyll cells of Zinnia elegans.
Plant Cell Physiol. 42, 673-676.
Iwamoto, K., Fukuda, H. and Sugiyama, M.
Elimination of POR expression correlates with red leaf formation in Amaranthus tricolor.
Plant J., 27, 275-284.
Nishitani, C., Demura, T. and Fukuda, H.
Primary phloem-specific expression of a Zinnia elegans homeobox gene.
Plant Cell Physiol. 42, 1210-1218.
Motose, H., Fukuda, H. and Sugiyama, M.
Involvement of local intercellular communication in the differentiation of zinnia mesophyll cells into tracheary elements.
Planta 213, 121-131.
Motose, H., Sugiyama, M. and Fukuda, H.
An arabinogalactan protein(s) is a key component of a fraction that mediates local intercellular communication involved in tracheary element differentiation of zinnia mesophyll cells.
Plant Cell Physiol. 42, 129-137.
Obara, K., Kuriyama, H. and Fukuda, H.
Direct evidence of active and rapid nuclear degradation triggered by vacuole rupture during programmed cell death in Zinnia.
Plant Physiol. 125, 615-626.
Yamamoto, R., Fujioka, S., Demura, T., Takatsuto, S. Yoshida, S. and Fukuda. H.
Brassinosteroid levels increase drastically prior to morphogenesis of tracheary elements.
Plant Physiol. 125, 556-563.
Reviews & others
Fukuda, H., Koizumi, K., Motomatsu, K., Motose, H. and Sugiyama, M.
Molecular mechanism of vascular pattern formation.
In "Molecular Breeding of Woody Plants (N. Morohoshi and A. Komamine eds.)", p. 53-61, Elsevier Science, The Netherlands.
Kuriyama, H. and Fukuda, H.
Regulation of tracheary element differentiation.
J Plant Growth Reg. 20, 35-51.
Kuriyama, H. and Fukuda, H.
Programmed cell death in developing tracheary elements.
Recent Research Developments in Plant Physiol. 2, 199-212.
Motose, H., Sugiyama, M. and Fukuda, H.
Cell-cell interactions during vascular development.
J. Plant Res. 114, 473-481.
Pesquet, E., Pichon, M., Pineau, C., Ranocha, P., Digonnet, C., Jauneau, A., Boudet, A. M., Fukuda, H., Demura, T. and Goffner, D.
Xylem formation and lignification in trees and model species.
In "Molecular Breeding of Woody Plants (N. Morohoshi and A. Komamine eds.)" p. 11-18, Elsevier Science, The Netherlands.
Shinohara, N., Demura T., and Fukuda, H.
Isolation of monoclonal antibodies recognizing xylem cell wall components by using a phage display subtraction method.
In "Molecular Breeding of Woody Plants (N. Morohoshi and A. Komamine eds.)" p. 143-148, Elsevier Science, The Netherlands.
Original papers
Hiwatashi, Y. and Fukuda, H.
Tissue-specific localization of mRNA for carrot homeobox genes,
CHBs. Plant Cell Physiol. 41, 639-643.
Koizumi, K., Sugiyama, M. and Fukuda, H.
A series of novel mutants of Arabidopsis thaliana that are defective in the formation of continuous vascular network: Calling the auxin signal flow canalization hypothesis into question.
Development 217, 3197-3204.
Nakashima, J., Takabe, K., Fujita, M., and Fukuda, H.
Autolysis during in vitro tracheary element differentiation - Formation and location of the perforation.
Plant Cell Physiol. 41, 1267-1271.
Nara-Sato, K. and Fukuda, H.
The rates of deceleration of nuclear and organellar DNA syntheses differ in the progenitor cells of the apical meristems during carrot somatic embryogenesis.
Planta 211, 457-466.
Shinohara, N., Demura, T. and Fukuda, H.
Isolation of a vascular cell wall-specific monoclonal antibody recognizing a cell polarity by using a phage display subtraction method.
Proc. Natl. Acad. Sci. USA 97, 2585-2590.
Reviews & others
Fukuda, H.
Programmed cell death of tracheary elements as a paradigm in plants.
Plant Mol. Biol. 44, 245-253.
Sugiyama, M., Ito, J., Aoyagi, S. and Fukuda, H.
Endonuclease.
Plant Mol. Biol. 44, 387-397.
Original papers
Tandon, P., Ishikawa, M., Komamine, A. and Fukuda, H. (1999)
Incorporation of fluorescence-conjugated anti-mouse immunoglobulin G into permiabilized Nicotiana tabacum BY-s cells.
Plant Sci. 140, 63-69.
Tokuji, Y. and Fukuda, H. (1999)
A rapid method for transformation of carrot (Daucus carota L.) by using direct somatic embryogenesis.
Biosci. Biotechnol. Biochem. 63, 519-523.
Usuda, H., Demura, T., Shimogawara, K. and Fukuda, H. (1999)
Development of sink capacity of the "storage root" in a radish cultivar with a high ratio of "storage root" to shoot.
Plant Cell Physiol. 40, 369-377.
Usuda, H., Rouhier, H., Demura, T., and Fukuda, H. (1999)
Development of sink capacity of the "storage root" in a radish cultivar with a low ratio of "storage root" to shoot.
Plant Cell Physiol. 40, 1210-1218.
Aoyagi, S., Sugiyama, M., and Fukuda, H. (1998)
BEN1 and ZEN1 cDNAs encoding S1-type DNases that are involved in programmed cell death in plants.
FEBS Lett. 429, 134-138.
Igarashi, M., Demura, T., and Fukuda, H. (1998)
Expression of the Zinnia TED3 promoter in developing tracheary elements of transgenic Arabidopsis.
Plant Mol. Biol. 36, 917-927.
Ozawa, S., Yasutani, I., Fukuda, H., Komamine, A., and Sugiyama M. (1998)
Organogenic responses in tissue culture of srd mutants of Arabidopsis thaliana.
Development 125, 135-142.
Yamamoto, R., Demura, T. and Fukuda, H. (1997)
Brassinosteroids induce entry into the final stage of tracheary element differentiation in cultured Zinnia cells.
Plant Cell Physiol. 38, 980-983.
Ito, M., Criqui, M.-C., Sakabe, M., Ohno, T., Hata, S., Kouchi, H., Hashimoto, J., Fukuda, H., Komamine, A., and Watanabe, A. (1997)
Cell-cycle-regulated transcription of A- and B-type plant cyclin genes in synchronous cultures.
Plant J. 11, 983-992.
Sato, Y., Watanabe, T., Komamine, A., Hibino, T., Shibata, D., Sugiyama, M., and Fukuda, H. (1997)
Changes in the activity and mRNA of cinnamyl alcohol dehydrogenase during tracheary element differentiation in Zinnia elegans.
Plant Physiol. 113, 425-430.
Sato, K. and Fukuda, H. (1996)
Purification and characterization of a mitochondrial DNA polymerase from cultured tobacco cells.
Plant Cell Physiol. 37, 989-995.
Yoshimura, T., Demura, T., Igarashi M., and Fukuda, H. (1996)
Differential expression of three genes for different tubulin isoforms during the initial culture of Zinnia mesophyll cells that divide and differentiate into tracheary elements.
Plant Cell Physiol. 37, 1167-1176.
Reviews & others
Fukuda, H. (1998)
Developmentally programmed cell death in plants: Death of xylem cells as a paradigm.
In "Apoptosis - Its role and mechanism (T. Yamada and Y. Hashimoto eds.)" p. 113-127, Business Center for Academic Societies Japan, Tokyo.
Fukuda, H., Watanabe, Y., Kuriyama, H., Aoyagi, S, Sugiyama, M., Yamamoto, R, Demura, T., Minami, A. (1998)
Programming of cell death during xylogenesis.
J. Plant Res. 111, 253-256.
Fukuda, H. (1997)
Tracheary element differentiation.
Plant Cell 9, 1147-1156.
Fukuda, H. (1997)
Programmed cell death during vascular system formation.
Cell Death Differ. 4, 684-688.
Original papers
Sato, Y., Sugiyama, M., Komamine, A. and Fukuda, H.(1995)
Separation and characterization of the isozymes of wall-bound peroxidase from cultured Zinnia cells during tracheary element differentiation.
Planta 196, 141-147.
Kawahara, R, Komamine, A. and Fukuda, H.(1995)
Isolation and characterization of homeobox-containing genes of carrot.
Plant Mol. Biol. 27, 155-164.
Sato, S., Toya, T., Kawahara, R., Whittier, R. F., Fukuda, H. and Komamine, A.(1995)
Isolation of a carrot gene expressed specifically during early-stage somatic embryogenesis. Plant Mol. Biol. 28, 39-46.
Joy, R.W.IV, Sugiyama, M., Fukuda, H. and Komamine, A.(1995)
Cloning and characterization of polyphenol oxidase cDNAs of Phytolacca americana. Plant Physiol. 107, 1083-1089.
Sato, Y., Sugiyama, M., Takagi, T. and Fukuda, H.(1995)
Purification of cationic peroxidases bound to the cell walls from the roots of Zinnia elegans.
J. Plant Res. 108, 463-468.
Minami, A. and Fukuda, H.(1995)
Transient and specific expression of a cysteine endoppeptidase during autolysis in differentiating tracheary elements from Zinnia mesophyll cells.
Plant Cell Physiol. 36, 1599-1606.
Fukuda, H. (1994)
Redifferentiation of single mesophyll cells into tracheary elements.
Int. J. Plant Sci. 155, 262-271.
Sugiyama, M., Fukuda, H. and Komamine, A.(1994)
Characteristics of the inhibitory effects of aphidicolin on transdifferentiation into tracheary elements of isolated mesophyll cells of Zinnia elegans.
Plant Cell Physiol. 35, 519-522.
Ito, M., Sato, T., Fukuda, H. and Komamine, A. (1994)
Meristem-specific gene expression directed by the promoter of the S-phase-specific gene, cyc07.
Plant Mol. Biol. 24, 863-878.
Kobayashi, H., and Fukuda, H. (1994)
Involvement of calmodulin and calmodulin-binding proteins in the differentiation of tracheary elements in Zinnia cells.
Planta 194, 388-394.
Demura, T. and Fukuda, H. (1994)
Novel vascular cell-specific genes whose expression is regulated temporally and spatially during vascular system development.
Plant Cell 6, 967-981.
Kawahara, R., Sunabori, S., Fukuda, H. and Komamine, A. (1994)
Analysis by in situ hybridization of the expression of elongation factor 1alpha in the carrot cells during somatic embryogenesis.
J. Plant Res. 107, 361-364.
Sato, Y., Sugiyama, M., Gorecki, R. J., Fukuda, H. and Komamine, A (1993)
Interrelationship between lignin deposition and the activities of peroxidase isozymes in differentiating tracheary elements of Zinnia: Analysis with L-α-aminooxy-β-phenylpropionic acid and 2-aminoindan-2-phosphonic acid.
Planta 189, 584-589.
Demura, T. and Fukuda, H. (1993)
Molecular cloning and characterization of cDNAs associated with tracheary element differentiation in cultured Zinnia cells.
Plant Physiol. 103, 815-821.
Suzuki, K., Ingold, E., Sugiyama, M., Fukuda, H. and Komamine, A. (1992)
Effects of 2,6-dichlorobenzonitrile on differentiation to tracheary elements of isolated mesophyll cells of Zinnia elegans and formation of secondary cell walls.
Physiol. Plant. 86, 43-48.
Kawahara, R., Sunabori, S., Fukuda, H. and Komamine, A. (1992)
A gene expressed preferentially in the globular stage of somatic embryogenesis encodes elongation factor 1α in carrot. Eur. J. Biochem. 157-162.
Leung, J., Fukuda, H., Wing, D., Schell, J. and Masterson, R. (1991)
Functional analysis of cis-elements, auxin-response and early developmental profiles of the mannopine synthase bidirectional promoter.
Mol. Gen. Gen. 230, 463-474.
Sugiyama, M., Fukuda, H. and Komamine, A. (1990)
Characteristics of the inhibitory effect of 5-fluorodeoxyuridine on cytodifferentiation into tracheary elements of isolated mesophyll cells of Zinnia elegans.
Plant Cell Physiol. 31, 61-67 .
Original papers
Fukuda, H. (1989)
Regulation of tubulin degradation in isolated Zinnia mesophyll cells in culture.
Plant Cell Physiol. 30, 243-252.
Kobayashi, H., Fukuda, H. and Shibaoka, H.(1988)
Interrelationship between the spatial disposition of actin filaments and microtubules during the differentiation of tracheary elements in cultured Zinnia cells.
Protoplasma 143, 29-37.
Iwasaki, T., Fukuda, H. and Shibaoka, H.(1988)
Relationship between DNA synthesis and the increase in the level of tubulin during dedifferentiation of isolated Zinnia mesophyll cells.
Protoplasma 143, 130-138.
Fukuda, H.(1987)
A change in tubulin synthesis in the process of tracheary element differentiation and cell division of isolated Zinnia mesophyll cells.
Plant Cell Physiol. 28, 517-528.
Kobayashi, H., Fukuda, H. and Shibaoka, H.(1987)
Reorganization of actin filaments associated with the differentiation of tracheary elements in Zinnia mesophyll cells.
Protoplasma 138, 69-71.
Fukuda, H. and Iwata, N. (1986)
Establishment of a sensitized immunoblotting method for measuring plant tubulin content. Plant Cell Physiol. 27, 273-283.
Sugiyama, M., Fukuda, H. and Komamine, A. (1986)
Effects of nutrient limitation and r-irradiation on tracheary element differentiation and cell division in single mesophyll cells of Zinnia elegans.
Plant Cell Physiol. 27, 601-606.
Iwasaki, T., Fukuda, H. and Shibaoka, H. (1986)
Inhibition of cell division and DNA synthesis by gibberellin in isolated Zinnia mesophyll cells.
Plant Cell Physiol. 27, 717-724.
Masuda, H., Fukuda, H. and Komamine, A. (1983)
Changes in peroxidase isoenzyme patterns during tracheary element differentiation in a culture of single cells isolated from the mesophyll of Zinnia elegans.
Z. Pflanzenphysiol. 112, 417-426.
Fukuda, H. and Komamine, A. (1983)
Changes in the synthesis of RNA and protein during tracheary element differentiation in single cells isolated from the mesophyll of Zinnia elegans.
Plant Cell Physiol. 24, 603-614.
Fukuda, H. and Komamine, A. (1982)
Lignin synthesis and its related enzymes as markers of tracheary-element differentiation in single cells isolated from the mesophyll of Zinnia elegans.
Planta 155, 423-430.
Fukuda, H. and Komamine, A. (1981)
Relationship between tracheary element differentiation and the cell cycle in single cells isolated from the mesophyll of Zinnia elegans.
Physiol. Plant. 52, 423-430.
Fukuda, H. and Komamine, A. (1981)
Relationship between tracheary element differentiation and DNA synthesis in single cells isolated from the mesophyll of Zinnia elegans. -- Analysis by inhibitors of DNA synthesis.
Plant Cell Physiol. 22, 41-49.
Fukuda, H. and Komamine, A. (1980)
Establishment of an experimental system for the tracheary element differentiation from single cells isolated from the mesophyll of Zinnia elegans.
Plant Physiol. 65, 57-60.
Fukuda, H. and Komamine, A.(1980)
Direct evidence for cytodifferentiation to tracheary elements without intervening mitosis in a culture of single cells isolated from the mesophyll of Zinnia elegans.
Plant Physiol. 65, 61-64.